RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 Q71RC1 249 aaPredicted RBP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 GALNTL5Q7Z4T8 443 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 CCDC50Q8IVM0 306 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 DCUN1D3Q8IWE4 304 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 DMRTC2Q8IXT2 367 aaPredicted RBP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 PIANPQ8IYJ0 282 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 HORMAD2Q8N7B1 307 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 MDS2Q8NDY4 140 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 SLC35G2Q8TBE7 412 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 NINJ1Q92982 152 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 LRRC45Q96CN5 670 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 IMMP1LQ96LU5 166 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 C10orf90Q96M02 699 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 FRMD6Q96NE9 622 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 NAP1L5Q96NT1 182 aaPredicted RBP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 SIGLEC12Q96PQ1 595 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 QKIQ96PU8 341 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 ALS2CR12Q96Q35 445 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 MIPEPQ99797 713 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 TBL1YQ9BQ87 522 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 FERMT1Q9BQL6 677 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 TRIM51Q9BSJ1 452 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 REPIN1Q9BWE0 567 aaKnown RBP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 GBA3Q9H227 469 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 C10orf88Q9H8K7 445 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 KCNK13Q9HB14 408 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 MKKSQ9NPJ1 570 aaPredicted RBP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 NPDC1Q9NQX5 325 aaPredicted RBP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 ENAMQ9NRM1 1142 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 DNAJB12Q9NXW2 375 aaKnown RBP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 AAR2Q9Y312 384 aaKnown RBP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 A0A1B0GTH6 734 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 GABRR3A8MPY1 467 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 SMTNL1A8MU46 457 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 HACD1B0YJ81 288 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 F8W8V4 182 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 H0YGG7 62 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 SPOPO43791 374 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 NRP2O60462 931 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 TOXO94900 526 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 SERPINC1P01008 464 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 SP1P08047 785 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 HOXD4P09016 255 aaPredicted RBP6.93□□□□□ -1.3
VPS4A-203ENST00000564399 TPH1P17752 444 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 DNASE1P24855 282 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 PSMB4P28070 264 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 PSMB5P28074 263 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 RBL1P28749 1068 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 CHRNB4P30926 498 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 PTGS2P35354 604 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 ARF3P61204 181 aaPredicted RBP6.93□□□□□ -1.3
VPS4A-203ENST00000564399 ZBED6P86452 979 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 MSLNQ13421 630 aaPredicted RBP6.93□□□□□ -1.3
VPS4A-203ENST00000564399 ITIH4Q14624 930 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 MAPKAPK3Q16644 382 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 SYT16Q17RD7 645 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 SLC25A25Q6KCM7 469 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 TMEM205Q6UW68 189 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 CPEB2Q7Z5Q1 589 aaKnown RBP6.93□□□□□ -1.3
VPS4A-203ENST00000564399 CD163Q86VB7 1156 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 CRLF3Q8IUI8 442 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 SIAH3Q8IW03 269 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 SLC22A15Q8IZD6 547 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 RAB42Q8N4Z0 105 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 LILRB4Q8NHJ6 448 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 RND1Q92730 232 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 MVB12AQ96EY5 273 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 SCMH1Q96GD3 660 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 CDKN2AIPNLQ96HQ2 116 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 ZFYVE21Q9BQ24 234 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 C19orf43Q9BQ61 176 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 GORASP1Q9BQQ3 440 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 MENTQ9BUN1 341 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 RAB11FIP5Q9BXF6 653 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 POLDIP3Q9BY77 421 aaKnown RBP6.93□□□□□ -1.3
VPS4A-203ENST00000564399 TGIF2Q9GZN2 237 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 NAT10Q9H0A0 1025 aaKnown RBP6.93□□□□□ -1.3
VPS4A-203ENST00000564399 SLC24A3Q9HC58 644 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 NLE1Q9NVX2 485 aaPredicted RBP6.93□□□□□ -1.3
VPS4A-203ENST00000564399 ST6GALNAC2Q9UJ37 374 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 EDARQ9UNE0 448 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 RNF6Q9Y252 685 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 RPH3AQ9Y2J0 694 aaPredicted RBP6.93□□□□□ -1.3
VPS4A-203ENST00000564399 HYOU1Q9Y4L1 999 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 ASB1Q9Y576 335 aa6.93□□□□□ -1.3
VPS4A-203ENST00000564399 A0A0A6YYC8 382 aaPredicted RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 A0A1B0GTH9 108 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 OR51F1A6NGY5 319 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 USP27XA6NNY8 438 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 H7C0S8 307 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 I3L1I5 382 aaPredicted RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 OR1I1O60431 355 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 CDC40O60508 579 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 VPS26AO75436 327 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 STK10O94804 968 aaKnown RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 APOA4P06727 396 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 TMEM253P0C7T8 217 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 MSNP26038 577 aaKnown RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 MSX1P28360 303 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms