RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 NAP1L3Q99457 506 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 SLC30A3Q99726 388 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 WDR77Q9BQA1 342 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 SOX17Q9H6I2 414 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 MRPS30Q9NP92 439 aaKnown RBP16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 ASF1BQ9NVP2 202 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 ZNF282Q9UDV7 671 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 CDC14AQ9UNH5 594 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 DHRS7Q9Y394 339 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 ESPL1Q14674 2120 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 WIPF3A6NGB9 483 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 H0YGG7 62 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 EIF3FO00303 357 aaPredicted RBP16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 NRDCO43847 1150 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 VPS26AO75436 327 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 CCNDBP1O95273 360 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 DDAH2O95865 285 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 SLC16A8O95907 504 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 ZGLP1P0C6A0 271 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 RPA3P35244 121 aaPredicted RBP16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 SKIV2L2P42285 1042 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 PNLIPRP1P54315 467 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 ARF3P61204 181 aaPredicted RBP16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 ABATP80404 500 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 OCA2Q04671 838 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 KLC1Q07866 573 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 MRPL49Q13405 166 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 THOC5Q13769 683 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 RBBP7Q16576 425 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 AGAP7PQ5VUJ5 663 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 GARNL3Q5VVW2 1013 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 ICE2Q659A1 982 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 CCDC137Q6PK04 289 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 SUSD1Q6UWL2 747 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 CUZD1Q86UP6 607 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 DENND6AQ8IWF6 608 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 AGGF1Q8N302 714 aaeCLIP16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 CISD2Q8N5K1 135 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 NAT8LQ8N9F0 302 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 CALML6Q8TD86 181 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 ZNF480Q8WV37 535 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 MIEF2Q96C03 454 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 SIGLEC10Q96LC7 697 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 AGAP4Q96P64 663 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 ACAT2Q9BWD1 397 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 LHPPQ9H008 270 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 ILKAPQ9H0C8 392 aaPredicted RBP16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 UTP6Q9NYH9 597 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 MAU2Q9Y6X3 613 aa16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 UTP20O75691 2785 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-203ENST00000563798 CTAGE9A4FU28 777 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 PCDH17O14917 1159 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 HPP00738 406 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 EIF2S1P05198 315 aaKnown RBP16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 ERVK-10P10266 1014 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 EZRP15311 586 aaKnown RBP16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 CTBP1Q13363 440 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 DSG2Q14126 1118 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 LONRF1Q17RB8 773 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 EIF2S3LQ2VIR3 472 aaKnown RBP16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 SHISA6Q6ZSJ9 500 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 METTL27Q8N6F8 245 aaPredicted RBP16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 MS4A14Q96JA4 679 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 CRB3Q9BUF7 120 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 TGIF2Q9GZN2 237 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 SYNPO2LQ9H987 977 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 TAC3Q9UHF0 121 aa16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 TSR3Q9UJK0 312 aaKnown RBP16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 RUVBL1Q9Y265 456 aaKnown RBP16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 COPG1Q9Y678 874 aaKnown RBP16.4■□□□□ 0.22
VPS9D1-203ENST00000563798 TXNDC9O14530 226 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 PRPF4O43172 522 aaKnown RBP eCLIP16.39■□□□□ 0.214e-7■■■■□ 24.1
VPS9D1-203ENST00000563798 KIF5CO60282 957 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 FBLP22087 321 aaKnown RBP16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 SLC26A3P40879 764 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 SLC1A2P43004 574 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 TSFMP43897 325 aaKnown RBP16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 FNTAP49354 379 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 TERF1P54274 439 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 Q0VFX4 171 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 NR6A1Q15406 480 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 IRAK1BP1Q5VVH5 260 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 CSNK1A1LQ8N752 337 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 CD200R1Q8TD46 325 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 ACTRT1Q8TDG2 376 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 LMF1Q96S06 567 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 CCDC68Q9H2F9 335 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 FBXO6Q9NRD1 293 aaPredicted RBP16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 C14orf105Q9NVL8 296 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 PLEKHB1Q9UF11 243 aaPredicted RBP16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 C3orf18Q9UK00 162 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 FBXO5Q9UKT4 447 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 NTNG1Q9Y2I2 539 aa16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 SPTBN1Q01082 2364 aaKnown RBP16.39■□□□□ 0.21
VPS9D1-203ENST00000563798 GOLGA8MH3BSY2 632 aa16.38■□□□□ 0.21
VPS9D1-203ENST00000563798 PGRMC1O00264 195 aaKnown RBP16.38■□□□□ 0.21
VPS9D1-203ENST00000563798 ZBTB14O43829 449 aa16.38■□□□□ 0.21
VPS9D1-203ENST00000563798 ALOX12BO75342 701 aa16.38■□□□□ 0.21
VPS9D1-203ENST00000563798 RNF224P0DH78 156 aa16.38■□□□□ 0.21
VPS9D1-203ENST00000563798 ACPPP15309 386 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms