RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CBSLP0DN79 551 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 NOS3P29474 1203 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 CBSP35520 551 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 SLC7A2P52569 658 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 RPS7P62081 194 aaKnown RBP8.95□□□□□ -0.98
VPS39-205ENST00000562258 NNATQ16517 81 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 TMEM215Q68D42 235 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 ANKRD26P1Q6NSI1 321 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 TMEM92Q6UXU6 159 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 CHMP1BQ7LBR1 199 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 BHLHA9Q7RTU4 235 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 NUDT13Q86X67 352 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 OR4N5Q8IXE1 308 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 TMEM156Q8N614 296 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 TNIP2Q8NFZ5 429 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 ARMC7Q9H6L4 198 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 H2AFY2Q9P0M6 372 aaPredicted RBP8.95□□□□□ -0.98
VPS39-205ENST00000562258 WARS2Q9UGM6 360 aaKnown RBP8.95□□□□□ -0.98
VPS39-205ENST00000562258 ZDHHC2Q9UIJ5 367 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 DMTF1Q9Y222 760 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 E7ESA3 106 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 PSMD11O00231 422 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 BTN3A3O00478 584 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 TFPIP10646 304 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 COX4I1P13073 169 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 GUCA1AP43080 201 aaPredicted RBP8.95□□□□□ -0.98
VPS39-205ENST00000562258 HK3P52790 923 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 DGKQP52824 942 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 RACK1P63244 317 aaKnown RBP8.95□□□□□ -0.98
VPS39-205ENST00000562258 PRSS36Q5K4E3 855 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 RNF44Q7L0R7 432 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 SFRP1Q8N474 314 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 GPR151Q8TDV0 419 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 RGMAQ96B86 450 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 CD244Q9BZW8 370 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 MRM3Q9HC36 420 aaKnown RBP8.95□□□□□ -0.98
VPS39-205ENST00000562258 CHCHD3Q9NX63 227 aaKnown RBP8.95□□□□□ -0.98
VPS39-205ENST00000562258 MAT2BQ9NZL9 334 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 COPS7AQ9UBW8 275 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 PDE10AQ9Y233 779 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 RUVBL1Q9Y265 456 aaKnown RBP8.95□□□□□ -0.98
VPS39-205ENST00000562258 SHISA7A6NL88 538 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 CCND1P24385 295 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 RPL3P39023 403 aaKnown RBP8.95□□□□□ -0.98
VPS39-205ENST00000562258 TAS2R50P59544 299 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 CSTF3Q12996 717 aaKnown RBP8.95□□□□□ -0.98
VPS39-205ENST00000562258 GNA13Q14344 377 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 TBCELQ5QJ74 424 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 FIGLAQ6QHK4 219 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 CCL4L1Q8NHW4 92 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 OR1E3Q8WZA6 343 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 MVB12BQ9H7P6 319 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 HCN3Q9P1Z3 774 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 DKK3Q9UBP4 350 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 RARRES3Q9UL19 164 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 GTF2A1LQ9UNN4 478 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 ANGPT4Q9Y264 503 aa8.95□□□□□ -0.98
VPS39-205ENST00000562258 SLC9B1P1A6NJY1 282 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 SAC3D1A6NKF1 404 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 CD1DP15813 335 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 ME2P23368 584 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 CD27P26842 260 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 PSMB5P28074 263 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 ZNF140P52738 457 aaPredicted RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 FCHO2Q0JRZ9 810 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 DOC2AQ14183 400 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 SQLEQ14534 574 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 OR4D1Q15615 310 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 FBXW10Q5XX13 1052 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 LIMS2Q7Z4I7 341 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 DHDDSQ86SQ9 333 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 CBARPQ8N350 705 aaPredicted RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 VANGL1Q8TAA9 524 aaPredicted RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 UTP15Q8TED0 518 aaKnown RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 NELL1Q92832 810 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 VPS4AQ9UN37 437 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 DLGAP4Q9Y2H0 992 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 SOX1O00570 391 aaPredicted RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 NRP2O60462 931 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 HNRNPCL1O60812 293 aaKnown RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 CER1O95813 267 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 PDGFBP01127 241 aaPredicted RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 F3P13726 295 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 SLC6A2P23975 617 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 RPL34P49207 117 aaKnown RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 PSME3P61289 254 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 SMAD2Q15796 467 aaKnown RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 DHFR2Q86XF0 187 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 TICAM1Q8IUC6 712 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 CSNK1A1LQ8N752 337 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 TRPV3Q8NET8 790 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 OR4K1Q8NGD4 311 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 OR9I1Q8NGQ6 314 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 DCBLD2Q96PD2 775 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 RANBP9Q96S59 729 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 TMEM109Q9BVC6 243 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 IMPAD1Q9NX62 359 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 MKL2Q9ULH7 1088 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 CFAP73A6NFT4 308 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 H3BN98 237 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms