RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PRTGQ2VWP7 1150 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 VWA2Q5GFL6 755 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 MRNIPQ6NTE8 343 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 LRRC8BQ6P9F7 803 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 LINC00696Q6ZRV3 163 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 MAMDC2Q7Z304 686 aaPredicted RBP11.09□□□□□ -0.63
USP3-220ENST00000561381 KCNMB4Q86W47 210 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 AMER2Q8N7J2 671 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 CATSPER1Q8NEC5 780 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 OR9A1PQ8NGU1 263 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 GRHL3Q8TE85 626 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 MIEF2Q96C03 454 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 C5orf34Q96MH7 638 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 SLC30A3Q99726 388 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 ZFYVE21Q9BQ24 234 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 ZNF160Q9HCG1 818 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 LZTFL1Q9NQ48 299 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 SPATA7Q9P0W8 599 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 ZNF282Q9UDV7 671 aaPredicted RBP11.09□□□□□ -0.63
USP3-220ENST00000561381 C3orf18Q9UK00 162 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 SOX13Q9UN79 622 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 UNC79Q9P2D8 2635 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 DIDO1Q9BTC0 2240 aaKnown RBP11.09□□□□□ -0.63
USP3-220ENST00000561381 HEATR5BQ9P2D3 2071 aa11.08□□□□□ -0.63
USP3-220ENST00000561381 TEX15Q9BXT5 2789 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 CROCCQ5TZA2 2017 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 MYO1CO00159 1063 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 HPP00738 406 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 ESR1P03372 595 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 ACPPP15309 386 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 CMPK1P30085 196 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 CXCR5P32302 372 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 DCTP40126 519 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 SNRPNP63162 240 aaKnown RBP11.08□□□□□ -0.64
USP3-220ENST00000561381 OCA2Q04671 838 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 CDC16Q13042 620 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 KCNJ11Q14654 390 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 ZNF169Q14929 603 aaPredicted RBP11.08□□□□□ -0.64
USP3-220ENST00000561381 MUM1Q2TAK8 710 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 HKDC1Q2TB90 917 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 KLHL38Q2WGJ6 581 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 IRAK1BP1Q5VVH5 260 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 ANKRD22Q5VYY1 191 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 ATG9BQ674R7 924 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 PRMT9Q6P2P2 845 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 C4orf22Q6V702 233 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 CENPUQ71F23 418 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 SDCCAG8Q86SQ7 713 aaPredicted RBP11.08□□□□□ -0.64
USP3-220ENST00000561381 CILP2Q8IUL8 1156 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 PRELID2Q8N945 189 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 PPFIBP2Q8ND30 876 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 ST6GALNAC3Q8NDV1 305 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 GIMAP7Q8NHV1 300 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 MAGEC3Q8TD91 643 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 SMPDL3AQ92484 453 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 CABS1Q96KC9 395 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 PKP4Q99569 1192 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 PLCD4Q9BRC7 762 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 EPS8L2Q9H6S3 715 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 MRPS30Q9NP92 439 aaKnown RBP11.08□□□□□ -0.64
USP3-220ENST00000561381 AGPAT4Q9NRZ5 378 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 RUVBL1Q9Y265 456 aaKnown RBP11.08□□□□□ -0.64
USP3-220ENST00000561381 MRFAP1Q9Y605 127 aa11.08□□□□□ -0.64
USP3-220ENST00000561381 IGLV3-12A0A075B6K2 115 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 H3BMM5 538 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 AP3B1O00203 1094 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 MAP2K7O14733 419 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 CEP104O60308 925 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 PSIP1O75475 530 aaKnown RBP11.07□□□□□ -0.64
USP3-220ENST00000561381 CELA2AP08217 269 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 ERVK-10P10266 1014 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 COX6A1P12074 109 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 PKMP14618 531 aaKnown RBP11.07□□□□□ -0.64
USP3-220ENST00000561381 TPSB2P20231 275 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 OGNP20774 298 aaKnown RBP11.07□□□□□ -0.64
USP3-220ENST00000561381 FBLP22087 321 aaKnown RBP11.07□□□□□ -0.64
USP3-220ENST00000561381 ATP5DP30049 168 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 RPA3P35244 121 aaPredicted RBP11.07□□□□□ -0.64
USP3-220ENST00000561381 TSFMP43897 325 aaKnown RBP11.07□□□□□ -0.64
USP3-220ENST00000561381 CARSP49589 748 aaKnown RBP11.07□□□□□ -0.64
USP3-220ENST00000561381 CLCN7P51798 805 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 ADARP55265 1226 aaKnown RBP11.07□□□□□ -0.64
USP3-220ENST00000561381 CDK16Q00536 496 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 MFAP5Q13361 173 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 CUL1Q13616 776 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 TPSAB1Q15661 275 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 ANKRD20A4Q4UJ75 823 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 RNF187Q5TA31 235 aaPredicted RBP11.07□□□□□ -0.64
USP3-220ENST00000561381 FAAH2Q6GMR7 532 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 KIAA0930Q6ICG6 404 aaPredicted RBP11.07□□□□□ -0.64
USP3-220ENST00000561381 NEPROQ6NW34 567 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 BLOC1S3Q6QNY0 202 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 ISLR2Q6UXK2 745 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 CAND1Q86VP6 1230 aaKnown RBP11.07□□□□□ -0.64
USP3-220ENST00000561381 PAQR7Q86WK9 346 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 REXO1L1PQ8IX06 675 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 SHISA5Q8N114 240 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 ARHGEF39Q8N4T4 335 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 CSNK1A1LQ8N752 337 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 AMER3Q8N944 861 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms