RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 C10orf107Q8IVU9 208 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 CACNA2D3Q8IZS8 1091 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 NAGSQ8N159 534 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 AVL9Q8NBF6 648 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 AGBL5Q8NDL9 886 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 ZNF75CPQ92670 426 aaPredicted RBP11.41□□□□□ -0.58
LDLR-212ENST00000560467 TFGQ92734 400 aaPredicted RBP11.41□□□□□ -0.58
LDLR-212ENST00000560467 RAD51AP1Q96B01 352 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 PHF21BQ96EK2 531 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 CHMP6Q96FZ7 201 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 CNDP1Q96KN2 507 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 TRMOQ9BU70 441 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 DDA1Q9BW61 102 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 C12orf65Q9H3J6 166 aaKnown RBP11.41□□□□□ -0.58
LDLR-212ENST00000560467 STN1Q9H668 368 aaKnown RBP11.41□□□□□ -0.58
LDLR-212ENST00000560467 CCDC134Q9H6E4 229 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 PFDN4Q9NQP4 134 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 THAP1Q9NVV9 213 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 OCIAD1Q9NX40 245 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 SLC39A1Q9NY26 324 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 WWOXQ9NZC7 414 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 POLG2Q9UHN1 485 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 EMCNQ9ULC0 261 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 KCNK6Q9Y257 313 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 ASF1AQ9Y294 204 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 STK38LQ9Y2H1 464 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 PLEKHM1Q9Y4G2 1056 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 SDK2Q58EX2 2172 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 IGHV1OR21-1A0A087WYE8 117 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 NCF1BA6NI72 391 aaPredicted RBP11.4□□□□□ -0.58
LDLR-212ENST00000560467 OR5K4A6NMS3 321 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 EFCAB7A8K855 629 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 NCF1CA8MVU1 366 aaPredicted RBP11.4□□□□□ -0.58
LDLR-212ENST00000560467 G3V2L1 256 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 STX16-NPEPL1H3BU86 382 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 GFYI3L273 518 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 STX16O14662 325 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 PPM1DO15297 605 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 NKX2-8O15522 239 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 DLX3O60479 287 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 CRCPO75575 148 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 MATN4O95460 622 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 GUCA1CO95843 209 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 TROVE2P10155 538 aaKnown RBP eCLIP11.4□□□□□ -0.58
LDLR-212ENST00000560467 PRKAR1AP10644 381 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 NCF1P14598 390 aaPredicted RBP11.4□□□□□ -0.58
LDLR-212ENST00000560467 BGNP21810 368 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 CSTF2P33240 577 aaKnown RBP eCLIP11.4□□□□□ -0.58
LDLR-212ENST00000560467 ACTR1BP42025 376 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 GPR3P46089 330 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 CCR10P46092 362 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 NAGLUP54802 743 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 ACTR1AP61163 376 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 HERVK_113P63132 956 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 FOXK1P85037 733 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 TRA2AQ13595 282 aaKnown RBP eCLIP11.4□□□□□ -0.58
LDLR-212ENST00000560467 GBX1Q14549 363 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 TGFBIQ15582 683 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 ANKS6Q68DC2 871 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 CYHR1Q6ZMK1 362 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 TRIM48Q8IWZ4 208 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 PTGR2Q8N8N7 351 aaPredicted RBP11.4□□□□□ -0.58
LDLR-212ENST00000560467 OR4D9Q8NGE8 314 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 ATP6V1E2Q96A05 226 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 PTERQ96BW5 349 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 CXorf40BQ96DE9 158 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 FERD3LQ96RJ6 166 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 ERVK-6Q9BXR3 956 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 ZMYND15Q9H091 742 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 WWP1Q9H0M0 922 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 MVB12BQ9H7P6 319 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 ZNF71Q9NQZ8 489 aaPredicted RBP11.4□□□□□ -0.58
LDLR-212ENST00000560467 KCNK4Q9NYG8 393 aa11.4□□□□□ -0.58
LDLR-212ENST00000560467 USP9XQ93008 2570 aaPredicted RBP11.4□□□□□ -0.58
LDLR-212ENST00000560467 LRRK1Q38SD2 2015 aa11.4□□□□□ -0.59
LDLR-212ENST00000560467 ZNF891A8MT65 544 aaPredicted RBP11.39□□□□□ -0.59
LDLR-212ENST00000560467 UBXN8O00124 270 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 NPHS1O60500 1241 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 KATNA1O75449 491 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 PSIP1O75475 530 aaKnown RBP11.39□□□□□ -0.59
LDLR-212ENST00000560467 SUPT7LO94864 414 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 MLYCDO95822 493 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 RPL10P27635 214 aaKnown RBP11.39□□□□□ -0.59
LDLR-212ENST00000560467 ARL1P40616 181 aaPredicted RBP11.39□□□□□ -0.59
LDLR-212ENST00000560467 CASRP41180 1078 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 SLC1A6P48664 564 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 PCLAFQ15004 111 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 WASH2PQ6VEQ5 465 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 RGS9BPQ6ZS82 235 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 C11orf96Q7Z7L8 435 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 DCUN1D3Q8IWE4 304 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 TBC1D21Q8IYX1 336 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 C9orf43Q8TAL5 461 aaPredicted RBP11.39□□□□□ -0.59
LDLR-212ENST00000560467 C12orf66Q96MD2 445 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 ATOH8Q96SQ7 321 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 CTRCQ99895 268 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 RAB11FIP5Q9BXF6 653 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 ILKAPQ9H0C8 392 aaPredicted RBP11.39□□□□□ -0.59
LDLR-212ENST00000560467 WASH6PQ9NQA3 447 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 IMP3Q9NV31 184 aaKnown RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms