RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CXADRP78310 365 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 ABATP80404 500 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 PRDX1Q06830 199 aaKnown RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 VAC14Q08AM6 782 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 NAE1Q13564 534 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 BMPR2Q13873 1038 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 TSNQ15631 228 aaKnown RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 ZXDCQ2QGD7 858 aaPredicted RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 TUBB8Q3ZCM7 444 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 FAM153CQ494X1 144 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 ZC3H12BQ5HYM0 836 aaKnown RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 PRAMEF13Q5VWM6 474 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 ZNF425Q6IV72 752 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 INO80CQ6PI98 192 aaPredicted RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 CCDC81Q6ZN84 652 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 RNF44Q7L0R7 432 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 TRMT10CQ7L0Y3 403 aaKnown RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 PAQR7Q86WK9 346 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 MCATQ8IVS2 390 aaKnown RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 GSPT2Q8IYD1 628 aaKnown RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 GPR135Q8IZ08 494 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 SNRNP27Q8WVK2 155 aaKnown RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 SLC44A1Q8WWI5 657 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 SLC39A7Q92504 469 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 N4BP2L2Q92802 583 aaPredicted RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 KIAA1143Q96AT1 154 aaPredicted RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 MRRFQ96E11 262 aaKnown RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 HIST1H2AHQ96KK5 128 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 UBXN10Q96LJ8 280 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 ZNF285Q96NJ3 590 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 HIST1H2AJQ99878 128 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 PLCD4Q9BRC7 762 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 H2AFJQ9BTM1 129 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 DPH7Q9BTV6 452 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 SGPP1Q9BX95 441 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 TRIM54Q9BYV2 358 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 TXLNGYQ9BZA5 131 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 SPRTNQ9H040 489 aaPredicted RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 ATG10Q9H0Y0 220 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 ACTR5Q9H9F9 607 aaPredicted RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 MRPS30Q9NP92 439 aaKnown RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 ENAMQ9NRM1 1142 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 PCMTD2Q9NV79 361 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 ANKMY1Q9P2S6 941 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 CTNNAL1Q9UBT7 734 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 CROTQ9UKG9 612 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 PADI1Q9ULC6 663 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 PCDHGA4Q9Y5G9 962 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 MYO18BQ8IUG5 2567 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 HEATR5BQ9P2D3 2071 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 A0A087WUV0 522 aaPredicted RBP8.97□□□□□ -0.97
LDLR-211ENST00000560173 PABPN1LA6NDY0 278 aaKnown RBP8.97□□□□□ -0.97
LDLR-211ENST00000560173 MEN1O00255 615 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 ZNF749O43361 778 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 GUCA1CO95843 209 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 CCNYL3P0C7X3 344 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 CD1DP15813 335 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 CCND1P24385 295 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 GMPRP36959 345 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 ATP6V0D1P61421 351 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 CDKL1Q00532 357 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 DLG1Q12959 904 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 DNASE1L3Q13609 305 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 UAP1Q16222 522 aaPredicted RBP8.97□□□□□ -0.97
LDLR-211ENST00000560173 THEMIS2Q5TEJ8 643 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 ARHGAP40Q5TG30 622 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 MROH9Q5TGP6 573 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 ZNF517Q6ZMY9 492 aaPredicted RBP8.97□□□□□ -0.97
LDLR-211ENST00000560173 ZNF605Q86T29 641 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 DSELQ8IZU8 1212 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 SPATA6LQ8N4H0 392 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 OR56A3Q8NH54 315 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 UHMK1Q8TAS1 419 aaKnown RBP8.97□□□□□ -0.97
LDLR-211ENST00000560173 CT55Q8WUE5 264 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 ATL1Q8WXF7 558 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 PTERQ96BW5 349 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 CLIP3Q96DZ5 547 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 MED8Q96G25 268 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 PAFAH2Q99487 392 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 SELENOSQ9BQE4 189 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 UNKQ9C0B0 810 aaKnown RBP8.97□□□□□ -0.97
LDLR-211ENST00000560173 PCBD2Q9H0N5 130 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 EPB41L4BQ9H329 900 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 SYNPO2LQ9H987 977 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 AKIRIN1Q9H9L7 192 aaPredicted RBP8.97□□□□□ -0.97
LDLR-211ENST00000560173 GPN2Q9H9Y4 310 aaPredicted RBP8.97□□□□□ -0.97
LDLR-211ENST00000560173 LHX9Q9NQ69 397 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 ABCF3Q9NUQ8 709 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 CUEDC1Q9NWM3 386 aaPredicted RBP8.97□□□□□ -0.97
LDLR-211ENST00000560173 UTP6Q9NYH9 597 aaKnown RBP8.97□□□□□ -0.97
LDLR-211ENST00000560173 IL17BQ9UHF5 180 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 SNX7Q9UNH6 387 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 SH2B3Q9UQQ2 575 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 OARD1Q9Y530 152 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 AP1M2Q9Y6Q5 423 aa8.97□□□□□ -0.97
LDLR-211ENST00000560173 FER1L5A0AVI2 2057 aa8.96□□□□□ -0.97
LDLR-211ENST00000560173 ATMQ13315 3056 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 LOC105369274A0A096LPK9 316 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 LOC102723532A0A0G2JNH3 316 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 A0A0J9YVX5 310 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms