RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 KCNA4P22459 653 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 EEF1DP29692 281 aaKnown RBP8.89□□□□□ -0.99
LDLR-210ENST00000559340 CCR8P51685 355 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 GFERP55789 205 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 PPP2R2AP63151 447 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 HSD11B2P80365 405 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 IRF8Q02556 426 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 ACY1Q03154 408 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 GTF2H2Q13888 395 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 ISXQ2M1V0 245 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 HES3Q5TGS1 186 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 LIPMQ5VYY2 423 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 GTF2H2CQ6P1K8 395 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 ARHGAP22Q7Z5H3 698 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 SLITRK4Q8IW52 837 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 KIRREL3Q8IZU9 778 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 KRT78Q8N1N4 520 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 TMEM151AQ8N4L1 468 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 TEX9Q8N6V9 391 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 AGBL5Q8NDL9 886 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 KLHL6Q8WZ60 621 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 UBE2E3Q969T4 207 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 PYCR2Q96C36 320 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 THAP11Q96EK4 314 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 L3HYPDHQ96EM0 354 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 CNDP1Q96KN2 507 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 CCDC74BQ96LY2 380 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 TRAPPC9Q96Q05 1148 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 PAIP2Q9BPZ3 127 aaKnown RBP8.89□□□□□ -0.99
LDLR-210ENST00000559340 AIF1LQ9BQI0 150 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 NUDT22Q9BRQ3 303 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 DPH7Q9BTV6 452 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 TRMOQ9BU70 441 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 ACAT2Q9BWD1 397 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 C1QTNF3Q9BXJ4 246 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 PITPNM3Q9BZ71 974 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 EHD1Q9H4M9 534 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 ZNF768Q9H5H4 540 aaKnown RBP8.89□□□□□ -0.99
LDLR-210ENST00000559340 FANCEQ9HB96 536 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 SOHLH2Q9NX45 425 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 KLHL3Q9UH77 587 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 EMCNQ9ULC0 261 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 BTRCQ9Y297 605 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 KLK4Q9Y5K2 254 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 CCDC187A0A096LP49 1063 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 SLC9B1P1A6NJY1 282 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 G3V2L1 256 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 TXNDC9O14530 226 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 SRPX2O60687 465 aaPredicted RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 CSO75390 466 aaKnown RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 OTCP00480 354 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 BPGMP07738 259 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 SBK3P0C264 359 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 C1GALT1C1LP0DN25 315 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 CREB1P16220 341 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 NELFEP18615 380 aaKnown RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 GRK2P25098 689 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 GSTM2P28161 218 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 PEBP1P30086 187 aaKnown RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 HPDP32754 393 aaPredicted RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 CSF2RBP32927 897 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 SERPINB5P36952 375 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 ARL1P40616 181 aaPredicted RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 HNF4AP41235 474 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 GRIA3P42263 894 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 MLLT3P42568 568 aaPredicted RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 SERPINB4P48594 390 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 AGTR2P50052 363 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 CCNG1P51959 295 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 CFHR1Q03591 330 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 CLCQ05315 142 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 PCDH1Q08174 1060 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 TBCCQ15814 346 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 TTMPQ5BVD1 217 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 XKR6Q5GH73 641 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 ZNF678Q5SXM1 525 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 KIAA1614Q5VZ46 1190 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 LIPJQ5W064 366 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 ATG9BQ674R7 924 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 NXPE4Q6UWF7 544 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 ZNF574Q6ZN55 896 aaPredicted RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 TMPRSS7Q7RTY8 843 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 ADCK2Q7Z695 626 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 C10orf107Q8IVU9 208 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 D2HGDHQ8N465 521 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 ZNF655Q8N720 491 aaPredicted RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 CCNYL1Q8N7R7 359 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 DCBLD1Q8N8Z6 715 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 ANKRD42Q8N9B4 389 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 C19orf47Q8N9M1 422 aaKnown RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 ABHD11Q8NFV4 315 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 TTLQ8NG68 377 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 OR8K5Q8NH50 307 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 ZBTB9Q96C00 473 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 REPS1Q96D71 796 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 PTCD3Q96EY7 689 aaKnown RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 LIN37Q96GY3 246 aaPredicted RBP8.88□□□□□ -0.99
LDLR-210ENST00000559340 SEC16BQ96JE7 1060 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 PLCD4Q9BRC7 762 aa8.88□□□□□ -0.99
LDLR-210ENST00000559340 TMEM79Q9BSE2 394 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms