RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 KMOO15229 486 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 TPST2O60704 377 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 TMCC2O75069 709 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 IL6P05231 212 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 RHOCP08134 193 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 DNAJA1P31689 397 aaKnown RBP11.01□□□□□ -0.65
LDLR-208ENST00000558518 SOAT1P35610 550 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 ZNF792Q3KQV3 632 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 SMUG1Q53HV7 270 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 LYPD8Q6UX82 237 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 FAM131AQ6UXB0 335 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 HMGN2P46Q86SG4 172 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 UMODL1-AS1Q8N2C9 162 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 DPP10Q8N608 796 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 SH3KBP1Q96B97 665 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 APIPQ96GX9 242 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 SLX1AQ9BQ83 275 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 CCM2Q9BSQ5 444 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 MMP27Q9H306 513 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 MS4A12Q9NXJ0 267 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 KNL1Q8NG31 2342 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 GNG14A0A1W2PPG7 69 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 TMEM88BA6NKF7 163 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 TNFRSF11BO00300 401 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 GFRA2O00451 464 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 STX16O14662 325 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 KIR3DL1P43629 444 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 IL10RBQ08334 325 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 ELP6Q0PNE2 266 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 NDUFA5Q16718 116 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 PRR23CQ6ZRP0 262 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 BCDIN3DQ7Z5W3 292 aaKnown RBP11.01□□□□□ -0.65
LDLR-208ENST00000558518 ADAMTSL2Q86TH1 951 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 MON1AQ86VX9 555 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 CCDC71Q8IV32 467 aaPredicted RBP11.01□□□□□ -0.65
LDLR-208ENST00000558518 ADGRG2Q8IZP9 1017 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 TP53I13Q8NBR0 393 aaPredicted RBP11.01□□□□□ -0.65
LDLR-208ENST00000558518 MED8Q96G25 268 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 FAM193BQ96PV7 902 aaPredicted RBP11.01□□□□□ -0.65
LDLR-208ENST00000558518 CDADC1Q9BWV3 514 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 TMEM121BQ9BXQ6 578 aaPredicted RBP11.01□□□□□ -0.65
LDLR-208ENST00000558518 FBXO8Q9NRD0 319 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 RNF181Q9P0P0 153 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 ARID1BQ8NFD5 2236 aaPredicted RBP11.01□□□□□ -0.65
LDLR-208ENST00000558518 H3BN98 237 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 J3KTA2 159 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 SAP18O00422 153 aaKnown RBP11.01□□□□□ -0.65
LDLR-208ENST00000558518 INSIG1O15503 277 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 HOXC11O43248 304 aaPredicted RBP11.01□□□□□ -0.65
LDLR-208ENST00000558518 TSPAN12O95859 305 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 KRT6AP02538 564 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 KRT6BP04259 564 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 PRR35P0CG20 571 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 KRT6CP48668 564 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 RUNX1T1Q06455 604 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 ZNF33AQ06730 810 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 SYT6Q5T7P8 510 aaPredicted RBP11.01□□□□□ -0.65
LDLR-208ENST00000558518 SDE2Q6IQ49 451 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 GLCCI1Q86VQ1 547 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 RAB43Q86YS6 212 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 AADATQ8N5Z0 425 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 SLC5A8Q8N695 610 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 KBTBD8Q8NFY9 601 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 GPR151Q8TDV0 419 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 OMA1Q96E52 524 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 NLE1Q9NVX2 485 aaPredicted RBP11.01□□□□□ -0.65
LDLR-208ENST00000558518 TMEM161AQ9NX61 479 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 PRSS21Q9Y6M0 314 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 OR2A25A4D2G3 310 aa11□□□□□ -0.65
LDLR-208ENST00000558518 METTL15A6NJ78 407 aa11□□□□□ -0.65
LDLR-208ENST00000558518 MANBAO00462 879 aa11□□□□□ -0.65
LDLR-208ENST00000558518 AP2A2O94973 939 aa11□□□□□ -0.65
LDLR-208ENST00000558518 RYKP34925 604 aa11□□□□□ -0.65
LDLR-208ENST00000558518 LRRC26Q2I0M4 334 aa11□□□□□ -0.65
LDLR-208ENST00000558518 CTXN3Q4LDR2 81 aa11□□□□□ -0.65
LDLR-208ENST00000558518 MANEALQ5VSG8 457 aa11□□□□□ -0.65
LDLR-208ENST00000558518 RNF219Q5W0B1 726 aaPredicted RBP11□□□□□ -0.65
LDLR-208ENST00000558518 SHQ1Q6PI26 577 aaKnown RBP11□□□□□ -0.65
LDLR-208ENST00000558518 GPR149Q86SP6 731 aa11□□□□□ -0.65
LDLR-208ENST00000558518 ZNF280BQ86YH2 543 aa11□□□□□ -0.65
LDLR-208ENST00000558518 STK40Q8N2I9 435 aa11□□□□□ -0.65
LDLR-208ENST00000558518 EFHD2Q96C19 240 aaPredicted RBP11□□□□□ -0.65
LDLR-208ENST00000558518 MTERF3Q96E29 417 aa11□□□□□ -0.65
LDLR-208ENST00000558518 BTN2A3PQ96KV6 586 aa11□□□□□ -0.65
LDLR-208ENST00000558518 VPS35Q96QK1 796 aa11□□□□□ -0.65
LDLR-208ENST00000558518 TCF25Q9BQ70 676 aa11□□□□□ -0.65
LDLR-208ENST00000558518 TRIM62Q9BVG3 475 aa11□□□□□ -0.65
LDLR-208ENST00000558518 DUSP21Q9H596 190 aa11□□□□□ -0.65
LDLR-208ENST00000558518 ZNF556Q9HAH1 456 aa11□□□□□ -0.65
LDLR-208ENST00000558518 CTPS2Q9NRF8 586 aa11□□□□□ -0.65
LDLR-208ENST00000558518 HEBP1Q9NRV9 189 aa11□□□□□ -0.65
LDLR-208ENST00000558518 CLCA3PQ9Y6N3 262 aa11□□□□□ -0.65
LDLR-208ENST00000558518 MYO7AQ13402 2215 aa11□□□□□ -0.65
LDLR-208ENST00000558518 TRAV19A0A0A6YYK7 116 aa11□□□□□ -0.65
LDLR-208ENST00000558518 SAGE2PA6NJ88 616 aa11□□□□□ -0.65
LDLR-208ENST00000558518 M0R082 166 aa11□□□□□ -0.65
LDLR-208ENST00000558518 CXCL11O14625 94 aa11□□□□□ -0.65
LDLR-208ENST00000558518 DSCR3O14972 297 aa11□□□□□ -0.65
LDLR-208ENST00000558518 WBP4O75554 376 aaKnown RBP11□□□□□ -0.65
LDLR-208ENST00000558518 TACR2P21452 398 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms