RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	ANKRD33B	A6NCL7	494 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZSCAN5B	A6NJL1	495 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PPP6C	O00743	305 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	IRAK2	O43187	625 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CHST10	O43529	356 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	TLL1	O43897	1013 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	C6orf47	O95873	294 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	IFNW1	P05000	195 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	BCHE	P06276	602 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	C7	P10643	843 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SPN	P16150	400 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CD72	P21854	359 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	DCDC1	P59894	354 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CDK5R2	Q13319	367 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	EFR3A	Q14156	821 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	HEPACAM	Q14CZ8	416 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	BICRAL	Q6AI39	1079 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	RAET1G	Q6H3X3	334 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	KIAA1161	Q6NSJ0	714 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005		Q6ZNX1	250 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CXXC5	Q7LFL8	322 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CDK20	Q8IZL9	346 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PARP16	Q8N5Y8	322 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	TRPV1	Q8NER1	839 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR2T11	Q8NH01	316 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	OLIG1	Q8TAK6	271 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CSGALNACT1	Q8TDX6	532 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC22A17	Q8WUG5	538 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	COL26A1	Q96A83	441 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ARMC5	Q96C12	935 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	MBOAT4	Q96T53	435 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	NELL2	Q99435	816 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PKP4	Q99569	1192 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF717	Q9BY31	904 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	NFKBIZ	Q9BYH8	718 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLITRK2	Q9H156	845 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLAMF8	Q9P0V8	285 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	OAS3	Q9Y6K5	1087 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	IRGM	A1A4Y4	181 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC38A8	A6NNN8	435 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	AQP9	O43315	295 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	GPR32	O75388	356 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CKM	P06732	381 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	HTR7	P34969	479 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SOX3	P41225	446 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	AKR1D1	P51857	326 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	HNRNPF	P52597	415 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	RPP38	P78345	283 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PTGR1	Q14914	329 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PON2	Q15165	354 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	NDUFAF6	Q330K2	333 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	GTDC1	Q4AE62	458 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	LIPK	Q5VXJ0	399 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PGM2L1	Q6PCE3	622 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SPRED1	Q7Z699	444 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	TMEM135	Q86UB9	458 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	LAPTM4B	Q86VI4	370 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	RNF130	Q86XS8	419 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	MARCH9	Q86YJ5	346 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	NCSTN	Q92542	709 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	KIAA1191	Q96A73	305 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	C12orf42	Q96LP6	360 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	KCTD7	Q96MP8	289 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	FRMD6	Q96NE9	622 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF599	Q96NL3	588 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	MMP27	Q9H306	513 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	FAM124B	Q9H5Z6	455 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLA2	Q9H6Q3	261 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CCSER2	Q9H7U1	834 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	IL1RAP	Q9NPH3	570 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	MRPL17	Q9NRX2	175 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	TAS2R9	Q9NYW1	312 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PIR	O00625	290 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ACOT8	O14734	319 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	MID1	O15344	667 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	NME6	O75414	186 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ERN1	O75460	977 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	STBD1	O95210	358 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	NPPA	P01160	153 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	HSD17B1	P14061	328 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	POLR2E	P19388	210 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SSTR4	P31391	388 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CSTF2	P33240	577 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	POLR2I	P36954	125 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	STC1	P52823	247 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	EMX1	Q04741	257 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SOX4	Q06945	474 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	TUSC3	Q13454	348 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SF3B4	Q15427	424 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	TARBP2	Q15633	366 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	FNDC3B	Q53EP0	1204 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ARHGAP15	Q53QZ3	475 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	DUS1L	Q6P1R4	473 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CXCL17	Q6UXB2	119 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	IKBIP	Q70UQ0	350 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CCDC28A	Q8IWP9	274 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF655	Q8N720	491 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ATAD1	Q8NBU5	361 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ATL1	Q8WXF7	558 aa		4.85	□□□□□ -1.63

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