RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 HOXA11P31270 313 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 P2RY2P41231 377 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 SOX2P48431 317 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 CENPAP49450 140 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 ZNF75DP51815 510 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 ECT2LQ008S8 904 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 BNC1Q01954 994 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 FCHO2Q0JRZ9 810 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 RCN2Q14257 317 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 NFE2L1Q14494 772 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 ZNF268Q14587 947 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 PNLIPRP3Q17RR3 467 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 HYAL4Q2M3T9 481 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 ITPRIPL2Q3MIP1 535 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 LINC00303Q3SY05 128 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 LRIF1Q5T3J3 769 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 CYP4A22Q5TCH4 519 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 SFMBT2Q5VUG0 894 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 SUMO4Q6EEV6 95 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 CFAP77Q6ZQR2 320 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 TAOK1Q7L7X3 1001 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 CATSPER4Q7RTX7 472 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 RD3Q7Z3Z2 195 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 HAUS6Q7Z4H7 955 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 CENPVQ7Z7K6 275 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 CCDC190Q86UF4 302 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 HAPLN4Q86UW8 402 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 HOOK3Q86VS8 718 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 CDR2LQ86X02 465 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 ERICH1Q86X53 443 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 ERC1Q8IUD2 1116 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 DENND6AQ8IWF6 608 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 TUSC5Q8IXB3 177 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 HORMAD2Q8N7B1 307 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 SCCPDHQ8NBX0 429 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 HJURPQ8NCD3 748 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 OLIG1Q8TAK6 271 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 ARHGAP45Q92619 1136 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 EXOC4Q96A65 974 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 SLITRK1Q96PX8 696 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 LGMNQ99538 433 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 POLR3CQ9BUI4 534 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 C1QTNF5Q9BXJ0 243 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 FRMD8Q9BZ67 464 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 GCOM2Q9BZD3 368 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 TOR3AQ9H497 397 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 DENND2DQ9H6A0 471 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 MINDY3Q9H8M7 445 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 MBNL1Q9NR56 388 aaKnown RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 TAS2R14Q9NYV8 317 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 CISD1Q9NZ45 108 aaKnown RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 DKK2Q9UBU2 259 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 STK39Q9UEW8 545 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 NDRG3Q9UGV2 375 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 MAD2L2Q9UI95 211 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 A3GALT2U3KPV4 340 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 PTPRDP23468 1912 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 TNRC6BQ9UPQ9 1833 aaKnown RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 MTORP42345 2549 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 NID2Q14112 1375 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 SLC22A23A1A5C7 686 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 CASTOR2A6NHX0 329 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 K7EQS6 105 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 IFNL4K9M1U5 179 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 PRRG1O14668 218 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 ZNF197O14709 1029 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 RRHO14718 337 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 PAPSS1O43252 624 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-208ENST00000551691 UGDHO60701 494 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 RSL1D1O76021 490 aaKnown RBP3.69□□□□□ -1.82
LIMA1-208ENST00000551691 RGS11O94810 467 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 GOSR1O95249 250 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 PRAMEF12O95522 483 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 RNF224P0DH78 156 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 SRCP12931 536 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 PFKFB1P16118 471 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 PDGFRAP16234 1089 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 GPD1P21695 349 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 DNASE1P24855 282 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 TNFRSF8P28908 595 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 GPR143P51810 404 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 ZNF33AQ06730 810 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 TWF1Q12792 350 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 GRIK2Q13002 908 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 RUNX3Q13761 415 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 MORF4L2Q15014 288 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 KRTAP21-3Q3LHN1 58 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 CDONQ4KMG0 1287 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 ASPRV1Q53RT3 343 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 ESCO2Q56NI9 601 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 NHSL2Q5HYW2 709 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 SIGIRRQ6IA17 410 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 TMEM211Q6ICI0 200 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 MOXD1Q6UVY6 613 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 CD300LGQ6UXG3 332 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 QSOX2Q6ZRP7 698 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 CLEC17AQ6ZS10 378 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 DET1Q7L5Y6 550 aa3.69□□□□□ -1.82
LIMA1-208ENST00000551691 PIWIL3Q7Z3Z3 882 aaKnown RBP3.69□□□□□ -1.82
LIMA1-208ENST00000551691 AMIGO2Q86SJ2 522 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms