RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TCAIMQ8N3R3 496 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 OR6K2Q8NGY2 324 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 POF1BQ8WVV4 589 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 KBTBD7Q8WVZ9 684 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 LINGO1Q96FE5 620 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 MED8Q96G25 268 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 PAWRQ96IZ0 340 aaKnown RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 ART5Q96L15 291 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 GPR21Q99679 349 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 OLFM1Q99784 485 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TMEM246Q9BRR3 403 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 CNPPD1Q9BV87 410 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 FUNDC2Q9BWH2 189 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 COLEC11Q9BWP8 271 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 KAT8Q9H7Z6 458 aaKnown RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 NEK6Q9HC98 313 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TBCCD1Q9NVR7 557 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 OPTCQ9UBM4 332 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 EIF2B4Q9UI10 523 aaKnown RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TNFSF13BQ9Y275 285 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TMED5Q9Y3A6 229 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 C2orf16Q68DN1 1984 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 ELOVL7A1L3X0 281 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 B4GALT4O60513 344 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 BMP10O95393 424 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 CBX7O95931 251 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 SERPINA1P01009 418 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 KRT6AP02538 564 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 FUCA1P04066 466 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 KRT6BP04259 564 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 PBLDP30039 288 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 RRM2P31350 389 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 FEN1P39748 380 aaKnown RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 KRT6CP48668 564 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 ATP12AP54707 1039 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 KCNJ8Q15842 424 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TAZQ16635 292 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 PHKG1Q16816 387 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 GFOD2Q3B7J2 385 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 AKIRIN2Q53H80 203 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 DDX53Q86TM3 631 aaKnown RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 SYT12Q8IV01 421 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 SLC15A3Q8IY34 581 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TMEM132CQ8N3T6 1108 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 CPA6Q8N4T0 437 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 NIPA2Q8N8Q9 360 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TTC29Q8NA56 475 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 KBTBD8Q8NFY9 601 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 SVIPQ8NHG7 77 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 WDR36Q8NI36 951 aaKnown RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TP53INP1Q96A56 240 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 APOLD1Q96LR9 279 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TRNT1Q96Q11 434 aaKnown RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 ADGRE3Q9BY15 652 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TM6SF2Q9BZW4 377 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 LHPPQ9H008 270 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TRIM45Q9H8W5 580 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 WDR6Q9NNW5 1121 aaKnown RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 PRDM8Q9NQV8 689 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 PAQR5Q9NXK6 330 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 ARL15Q9NXU5 204 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 RAPGEFL1Q9UHV5 662 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 MAGEL2Q9UJ55 1249 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 PCOLCE2Q9UKZ9 415 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TESMINQ9Y4I5 508 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 KCTD3Q9Y597 815 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 GREB1Q4ZG55 1949 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 DMDP11532 3685 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 MYL12BO14950 172 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 ZW10O43264 779 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 GAS2O43903 313 aaKnown RBP5.34□□□□□ -1.56
LIMA1-203ENST00000547825 PDE9AO76083 593 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 PAPLNO95428 1278 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 COX7A2P14406 83 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 DPP6P42658 865 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 HSPA7P48741 367 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 CD97P48960 835 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 ARSFP54793 590 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 SNRPD2P62316 118 aaKnown RBP5.34□□□□□ -1.56
LIMA1-203ENST00000547825 SEMG2Q02383 582 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 FAM109BQ6ICB4 259 aaPredicted RBP5.34□□□□□ -1.56
LIMA1-203ENST00000547825 EIF3MQ7L2H7 374 aaKnown RBP5.34□□□□□ -1.56
LIMA1-203ENST00000547825 GALNT10Q86SR1 603 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 EPHX4Q8IUS5 362 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 CEP97Q8IW35 865 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 TOP6BLQ8N6T0 577 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 C1orf162Q8NEQ5 155 aaPredicted RBP5.34□□□□□ -1.56
LIMA1-203ENST00000547825 OR4K2Q8NGD2 314 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 SPPL2BQ8TCT7 592 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 RSPH1Q8WYR4 309 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 LPPQ93052 612 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 RBM4BQ9BQ04 359 aaKnown RBP5.34□□□□□ -1.56
LIMA1-203ENST00000547825 RBM4Q9BWF3 364 aaKnown RBP5.34□□□□□ -1.56
LIMA1-203ENST00000547825 RPF2Q9H7B2 306 aaKnown RBP5.34□□□□□ -1.56
LIMA1-203ENST00000547825 IPPKQ9H8X2 491 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 ADPRHL2Q9NX46 363 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 MTMR10Q9NXD2 777 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 TRPC4Q9UBN4 977 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF510Q9Y2H8 683 aa5.34□□□□□ -1.56
LIMA1-203ENST00000547825 NPFFR2Q9Y5X5 522 aa5.34□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms