RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 MRPL39Q9NYK5 338 aaKnown RBP13.73□□□□□ -0.21
USP3-204ENST00000540797 BTAF1O14981 1849 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 JUNP05412 331 aaKnown RBP13.73□□□□□ -0.21
USP3-204ENST00000540797 ACRV1P26436 265 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 ZSWIM7Q19AV6 140 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 LINC00597Q9H2U6 94 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 IL21RQ9HBE5 538 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 CTPS2Q9NRF8 586 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 SERINC1Q9NRX5 453 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 P2RX2Q9UBL9 471 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 ELOA3DA6NLF2 546 aaPredicted RBP13.73□□□□□ -0.21
USP3-204ENST00000540797 TMEM189-UBE2V1I3L0A0 370 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 ADAMTS4O75173 837 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 EN2P19622 333 aaPredicted RBP13.73□□□□□ -0.21
USP3-204ENST00000540797 SLC10A2Q12908 348 aaPredicted RBP13.73□□□□□ -0.21
USP3-204ENST00000540797 ELOA3BQ3SY89 546 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 ATCAYQ86WG3 371 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 ELOA3Q8NG57 546 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 PEX13Q92968 403 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 KIAA1143Q96AT1 154 aaPredicted RBP13.73□□□□□ -0.21
USP3-204ENST00000540797 GDE1Q9NZC3 331 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 TMEM233B4DJY2 109 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 MID1O15344 667 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 THRBP10828 461 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 CHRM1P11229 460 aaPredicted RBP13.72□□□□□ -0.21
USP3-204ENST00000540797 C6P13671 934 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 POU2F1P14859 743 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 TMED10P49755 219 aaKnown RBP13.72□□□□□ -0.21
USP3-204ENST00000540797 NR1H2P55055 460 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 CCINQ13939 588 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 FAM156AQ8NDB6 213 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 OR4C6Q8NH72 309 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 COL21A1Q96P44 957 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 NOL6Q9H6R4 1146 aaKnown RBP13.72□□□□□ -0.21
USP3-204ENST00000540797 FBRSQ9HAH7 460 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 MKKSQ9NPJ1 570 aaPredicted RBP13.72□□□□□ -0.21
USP3-204ENST00000540797 APOBEC3BQ9UH17 382 aaKnown RBP13.72□□□□□ -0.21
USP3-204ENST00000540797 ZNF217O75362 1048 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 PGM3O95394 542 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 OMPP47874 163 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 ACSBG2Q5FVE4 666 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 CAND1Q86VP6 1230 aaKnown RBP13.72□□□□□ -0.21
USP3-204ENST00000540797 SNX33Q8WV41 574 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 KCNH6Q9H252 994 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 FZD4Q9ULV1 537 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 PDE4DIPQ5VU43 2346 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 A8MUI8 341 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 H7BY64 318 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 CLIC1O00299 241 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 CEBPBP17676 345 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 PIK3CBP42338 1070 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.72□□□□□ -0.21
USP3-204ENST00000540797 NCEH1Q6PIU2 408 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 FOXJ1Q92949 421 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 CENPNQ96H22 339 aaPredicted RBP13.72□□□□□ -0.21
USP3-204ENST00000540797 PRAP1Q96NZ9 151 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 LRRC3Q9BY71 257 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 ZDHHC2Q9UIJ5 367 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 STX16-NPEPL1H3BU86 382 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 STX16O14662 325 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 PM20D1Q6GTS8 502 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 TAS1R1Q7RTX1 841 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 PARP8Q8N3A8 854 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 MRPL43Q8N983 215 aaKnown RBP13.72□□□□□ -0.21
USP3-204ENST00000540797 Q9N2J8 555 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 ZIM2Q9NZV7 527 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 C4AP0C0L4 1744 aa13.72□□□□□ -0.21
USP3-204ENST00000540797 ZBTB11O95625 1053 aaPredicted RBP13.71□□□□□ -0.21
USP3-204ENST00000540797 ENGP17813 658 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 STAT5AP42229 794 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 RAB14P61106 215 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 FAM214AQ32MH5 1076 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 ZCCHC12Q6PEW1 402 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 IGDCC3Q8IVU1 814 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 ZNF347Q96SE7 839 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 HMG20AQ9NP66 347 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 FZD3Q9NPG1 666 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 CKLFQ9UBR5 152 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 PSAT1Q9Y617 370 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 SEMA4FO95754 770 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 ATP1A4Q13733 1029 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 PCBP2Q15366 365 aaKnown RBP eCLIP13.71□□□□□ -0.217e-7■■■■■ 28.7
USP3-204ENST00000540797 SMARCD3Q6STE5 483 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 CHRDL2Q6WN34 429 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 TIFABQ6ZNK6 161 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 GPER1Q99527 375 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 MCCC2Q9HCC0 563 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 PCDHB3Q9Y5E6 796 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 PCDHGA2Q9Y5H1 932 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 KPNA4O00629 521 aaPredicted RBP13.71□□□□□ -0.21
USP3-204ENST00000540797 PLGP00747 810 aaPredicted RBP13.71□□□□□ -0.21
USP3-204ENST00000540797 CXCR1P25024 350 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 CLCN4P51793 760 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 ENPP2Q13822 863 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 ZNF542PQ5EBM4 170 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 KIAA1161Q6NSJ0 714 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 THAP5Q7Z6K1 395 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 SCD5Q86SK9 330 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 ZDHHC14Q8IZN3 488 aa13.71□□□□□ -0.21
USP3-204ENST00000540797 TRIM39Q9HCM9 518 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms