RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TLE6Q9H808 572 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 ABT1Q9ULW3 272 aaKnown RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 STUB1Q9UNE7 303 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 NUBP2Q9Y5Y2 271 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 NPEPPSL1A6NEC2 478 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 MAGEB17A8MXT2 336 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 ZNF821O75541 412 aaPredicted RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 SAGP10523 405 aaPredicted RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 GJA5P36382 358 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 FAM174BQ3ZCQ3 159 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 TAPT1Q6NXT6 567 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 BAIAP2L2Q6UXY1 529 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 NRROSQ86YC3 692 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 ARHGAP12Q8IWW6 846 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 PARP16Q8N5Y8 322 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 NEIL3Q8TAT5 605 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 MYLIPQ8WY64 445 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 NSUN4Q96CB9 384 aaKnown RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 LRRC46Q96FV0 321 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 APOLD1Q96LR9 279 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 PCDHB18PQ96TA0 734 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 MEAF6Q9HAF1 191 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 KCNJ16Q9NPI9 418 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 TRIM36Q9NQ86 728 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 TIMM8BQ9Y5J9 83 aaPredicted RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 hCG_1807616A0A1W2PRN6 198 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 E7EQ34 232 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 GOSR2O14653 212 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 SHOXO15266 292 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 JRKO75564 520 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 SC5DO75845 299 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 SLC22A5O76082 557 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 NDUFA6P56556 154 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 C22orf42Q6IC83 251 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 FBXL19Q6PCT2 694 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 SERPINA13PQ6UXR4 307 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 SPATC1Q76KD6 591 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 DTX3Q8N9I9 347 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 GLB1L3Q8NCI6 653 aaPredicted RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 CDCA5Q96FF9 252 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 PRDM12Q9H4Q4 367 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 ZBTB20Q9HC78 741 aaPredicted RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 GPATCH2Q9NW75 528 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 TRPS1Q9UHF7 1281 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 PRELID3BQ9Y3B1 194 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 MAGEB4O15481 346 aaPredicted RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 GANABQ14697 944 aaKnown RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 SF3A2Q15428 464 aaKnown RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 XKR6Q5GH73 641 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 PPP1R26Q5T8A7 1209 aaPredicted RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 GTF2IRD2BQ6EKJ0 949 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 GTF2IRD2Q86UP8 949 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 DCP1BQ8IZD4 617 aaKnown RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 DEFB106AQ8N104 65 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 FAM83FQ8NEG4 500 aaPredicted RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 OR2L8Q8NGY9 312 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 NECAB3Q96P71 396 aaPredicted RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 MFFQ9GZY8 342 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 HEBP1Q9NRV9 189 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 LSM7Q9UK45 103 aaKnown RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 MAP4K5Q9Y4K4 846 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 PCDHGA8Q9Y5G5 932 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 ASTN1O14525 1302 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 A0A096LPI6 279 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 OR6C6A6NF89 314 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 PRKYO43930 277 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 NUDT14O95848 222 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 ALAS2P22557 587 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 CFL1P23528 166 aaKnown RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 ARL3P36405 182 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 SNAPC2Q13487 334 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 RFTN2Q52LD8 501 aaPredicted RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 ZNF311Q5JNZ3 666 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 SLC22A10Q63ZE4 541 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 SIAH1Q8IUQ4 282 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 TNFRSF10DQ9UBN6 386 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 ICKQ9UPZ9 632 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 MRPS23Q9Y3D9 190 aaKnown RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 A0A1W2PQL4 384 aaPredicted RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 F5H5P2 479 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 PROM1O43490 865 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 BUD23O43709 281 aaKnown RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 ALDH1A2O94788 518 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 BCKDHAP12694 445 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 MAGEA3P43357 314 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 TTPAP49638 278 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 HSPA14Q0VDF9 509 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 MFSD10Q14728 455 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 SPCS2Q15005 226 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 METTL11BQ5VVY1 283 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 JAZF1Q86VZ6 243 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 GJD3Q8N144 294 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 OR8S1Q8NH09 359 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 NEK7Q8TDX7 302 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 TXNL4BQ9NX01 149 aaKnown RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 THUMPD1Q9NXG2 353 aaKnown RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 A8MVJ9 347 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 IDUAP35475 653 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 UGT2B10P36537 528 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 CLCN4P51793 760 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms