RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 CKMT2P17540 419 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 GNAZP19086 355 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 MPSTP25325 297 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 LSP1P33241 339 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 PCDH1Q08174 1060 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 CHIT1Q13231 466 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 AMZ1Q400G9 498 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 ARMC6Q6NXE6 501 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 LETMD1Q6P1Q0 360 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 SLCO4C1Q6ZQN7 724 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 TMPRSS11BQ86T26 416 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 TRIM73Q86UV7 250 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 ZNF781Q8N8C0 355 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 OR4F6Q8NGB9 312 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 IFI44Q8TCB0 444 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 PPM1MQ96MI6 270 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 C7orf26Q96N11 449 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 ZNF317Q96PQ6 595 aaPredicted RBP18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 CCDC3Q9BQI4 270 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 ABCG4Q9H172 646 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 ACTR8Q9H981 624 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 EML4Q9HC35 981 aaKnown RBP18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 FTSJ1Q9UET6 329 aa18.22■□□□□ 0.51
TNFRSF1A-213ENST00000540022 IGKV1-8A0A0C4DH67 115 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 CLGNO14967 610 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 WFS1O76024 890 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 ESRRBO95718 433 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 CD1CP29017 333 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 ARL1P40616 181 aaPredicted RBP18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 LSSP48449 732 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 PPM1FP49593 454 aaPredicted RBP18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 PKNOX1P55347 436 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 GPLD1P80108 840 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 ABATP80404 500 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 IRF8Q02556 426 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 CFHR1Q03591 330 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 XKR6Q5GH73 641 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 KIAA1614Q5VZ46 1190 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 SPESP1Q6UW49 350 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 NXPE4Q6UWF7 544 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 GPRIN3Q6ZVF9 776 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 MILR1Q7Z6M3 343 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 AGR3Q8TD06 166 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 NCSTNQ92542 709 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 AHCYL2Q96HN2 611 aaKnown RBP18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 EPB41L1Q9H4G0 881 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 SLC6A20Q9NP91 592 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 MRPS30Q9NP92 439 aaKnown RBP18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 ZDHHC2Q9UIJ5 367 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 POMT2Q9UKY4 750 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 STK38LQ9Y2H1 464 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 RNF11Q9Y3C5 154 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 RAP2CQ9Y3L5 183 aa18.21■□□□□ 0.51
TNFRSF1A-213ENST00000540022 MAP1BP46821 2468 aaKnown RBP18.21■□□□□ 0.5
TNFRSF1A-213ENST00000540022 ANKRD12Q6UB98 2062 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 MATN2O00339 956 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 DUX1O43812 170 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 EDF1O60869 148 aaKnown RBP18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 CLDN9O95484 217 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 VIMP08670 466 aaKnown RBP18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 EBLN1P0CF75 366 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 C1GALT1C1LP0DN25 315 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 CD22P20273 847 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 VARSP26640 1264 aaKnown RBP18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 CMPK1P30085 196 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 FOXA1P55317 472 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 DOC2AQ14183 400 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 E2F2Q14209 437 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 SLC5A12Q1EHB4 618 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 IRGCQ6NXR0 463 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 USP53Q70EK8 1073 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 LRRC34Q8IZ02 419 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 PRR11Q96HE9 360 aaPredicted RBP18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 RAB33BQ9H082 229 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 ILKAPQ9H0C8 392 aaPredicted RBP18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 EVA1BQ9NVM1 165 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 EPHA6Q9UF33 1036 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 HAO1Q9UJM8 370 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 KLHL20Q9Y2M5 609 aa18.2■□□□□ 0.5
TNFRSF1A-213ENST00000540022 A0A1W2PQM1 296 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 TMEM233B4DJY2 109 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 H7BY64 318 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 CAPN5O15484 640 aaPredicted RBP18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 SNUPNO95149 360 aaKnown RBP18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 CCNDBP1O95273 360 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 ACP1P24666 158 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 CSF2RBP32927 897 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 CASP2P42575 452 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 SEC24CP53992 1094 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 GFERP55789 205 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 CCL7P80098 99 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 SH2D4BQ5SQS7 431 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 ATG9BQ674R7 924 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 MYLK4Q86YV6 388 aaPredicted RBP18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 CDYL2Q8N8U2 506 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 L3MBTL4Q8NA19 623 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 ABHD11Q8NFV4 315 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 GRAMD1AQ96CP6 724 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 WDR34Q96EX3 536 aa18.19■□□□□ 0.5
TNFRSF1A-213ENST00000540022 PRAP1Q96NZ9 151 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms