RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 FAM162AQ96A26 154 aa12.1□□□□□ -0.47
USP3-203ENST00000538686 PPP3R2Q96LZ3 170 aa12.1□□□□□ -0.47
USP3-203ENST00000538686 ORAI2Q96SN7 254 aa12.1□□□□□ -0.47
USP3-203ENST00000538686 TTYH1Q9H313 450 aaPredicted RBP12.1□□□□□ -0.47
USP3-203ENST00000538686 BRD9Q9H8M2 597 aa12.1□□□□□ -0.47
USP3-203ENST00000538686 CARS2Q9HA77 564 aaKnown RBP12.1□□□□□ -0.47
USP3-203ENST00000538686 MIOSQ9NXC5 875 aa12.1□□□□□ -0.47
USP3-203ENST00000538686 NYAP2Q9P242 653 aa12.1□□□□□ -0.47
USP3-203ENST00000538686 ZNF112Q9UJU3 913 aa12.1□□□□□ -0.47
USP3-203ENST00000538686 PURGQ9UJV8 347 aaKnown RBP12.1□□□□□ -0.47
USP3-203ENST00000538686 PIPSLA2A3N6 862 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 NEMP2A6NFY4 417 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 DNASE2O00115 360 aaPredicted RBP12.09□□□□□ -0.47
USP3-203ENST00000538686 ARNTLO00327 626 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 PPP6CO00743 305 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 UBFD1O14562 309 aaKnown RBP12.09□□□□□ -0.47
USP3-203ENST00000538686 PIP5K1BO14986 540 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 LYRM1O43325 122 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 MMP20O60882 483 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 C9P02748 559 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 HSMCR30P0CW71 290 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 CYP4B1P13584 511 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 CTPS1P17812 591 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 ALDH9A1P49189 494 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 ZNF81P51508 661 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 RPS8P62241 208 aaKnown RBP12.09□□□□□ -0.47
USP3-203ENST00000538686 ABATP80404 500 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 SP2Q02086 613 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 CREMQ03060 361 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 PUDPQ08623 228 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 CDKL4Q5MAI5 379 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 ZNF678Q5SXM1 525 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 DDI2Q5TDH0 399 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 METAP1DQ6UB28 335 aaPredicted RBP12.09□□□□□ -0.47
USP3-203ENST00000538686 MSLNLQ96KJ4 702 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 ERMAPQ96PL5 475 aaPredicted RBP12.09□□□□□ -0.47
USP3-203ENST00000538686 BCL2L14Q9BZR8 327 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 CD244Q9BZW8 370 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 MCOLN1Q9GZU1 580 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 PIF1Q9H611 641 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 GPATCH2LQ9NWQ4 482 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 A0A096LPI6 279 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 GLYATL1P3A0A0U1RQE8 302 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 CBX4O00257 560 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 QSOX1O00391 747 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 SYN3O14994 580 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 NUPL2O15504 423 aaKnown RBP12.09□□□□□ -0.47
USP3-203ENST00000538686 EPOP01588 193 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 LTA4HP09960 611 aaKnown RBP12.09□□□□□ -0.47
USP3-203ENST00000538686 C21orf33P30042 268 aaPredicted RBP12.09□□□□□ -0.47
USP3-203ENST00000538686 BAG6P46379 1132 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 LGALS3BPQ08380 585 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 NKG7Q16617 165 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 CDO1Q16878 200 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 C10orf62Q5T681 223 aaPredicted RBP12.09□□□□□ -0.47
USP3-203ENST00000538686 BHLHB9Q6PI77 547 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 RAB11FIP2Q7L804 512 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 HSD17B13Q7Z5P4 300 aaPredicted RBP12.09□□□□□ -0.47
USP3-203ENST00000538686 CAMKVQ8NCB2 501 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 CEP76Q8TAP6 659 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 LRRN4Q8WUT4 740 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 APH1BQ8WW43 257 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 UPRTQ96BW1 309 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 TSPAN17Q96FV3 270 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 DIRAS2Q96HU8 199 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 ITCHQ96J02 903 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 MRGPRX2Q96LB1 330 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 TTPALQ9BTX7 342 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 XYLT2Q9H1B5 865 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 GALNT9Q9HCQ5 603 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 BABAM2Q9NXR7 383 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 RCOR3Q9P2K3 495 aaPredicted RBP12.09□□□□□ -0.47
USP3-203ENST00000538686 POLG2Q9UHN1 485 aa12.09□□□□□ -0.47
USP3-203ENST00000538686 UBA6A0AVT1 1052 aaPredicted RBP12.08□□□□□ -0.48
USP3-203ENST00000538686 E9PQ18 207 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 K7ERI5 159 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 M0R233 179 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 KPNA3O00505 521 aaPredicted RBP12.08□□□□□ -0.48
USP3-203ENST00000538686 PCDHGA12O60330 932 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 GPX5O75715 221 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 SERPINA1P01009 418 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 S100A8P05109 93 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 S100A9P06702 114 aaKnown RBP12.08□□□□□ -0.48
USP3-203ENST00000538686 SLC2A2P11168 524 aaPredicted RBP12.08□□□□□ -0.48
USP3-203ENST00000538686 S100PP25815 95 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 CSKP41240 450 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 DAPP51397 102 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 CLCN4P51793 760 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 GTF2A2P52657 109 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 EPHA4P54764 986 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 HERVK_113P63132 956 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 PRKG2Q13237 762 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 PFKFB4Q16877 469 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 SWI5Q1ZZU3 235 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 PTCHD3Q3KNS1 767 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 KLHL22Q53GT1 634 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 INO80DQ53TQ3 878 aaPredicted RBP12.08□□□□□ -0.48
USP3-203ENST00000538686 ATCAYQ86WG3 371 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 CEP97Q8IW35 865 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 ENTHD1Q8IYW4 607 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms