RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 NKIRAS1Q9NYS0 192 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 MARCH4Q9P2E8 410 aaPredicted RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 TXNDC16Q9P2K2 825 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 SLC17A7Q9P2U7 560 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 DEC1Q9P2X7 70 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 HECAQ9UBI9 543 aaPredicted RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 Q9UFV3 132 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 FBXO5Q9UKT4 447 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 ZDHHC8Q9ULC8 765 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 GRID1Q9ULK0 1009 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 HS3ST2Q9Y278 367 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 MTO1Q9Y2Z2 717 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 NOSIPQ9Y314 301 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 ZNF711Q9Y462 761 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 MTF2Q9Y483 593 aaPredicted RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 USP15Q9Y4E8 981 aaPredicted RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 ITPR3Q14573 2671 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 A0A0J9YYE9 177 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 C1orf232A0A0U1RR37 186 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 WDR91A4D1P6 747 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 PRR23AA6NEV1 266 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 HNRNPCL2B2RXH8 293 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 ANKRD66B4E2M5 251 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 WASH3PC4AMC7 463 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 PLOD2O00469 737 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 TRAFD1O14545 582 aaPredicted RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 COPEO14579 308 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 STX7O15400 261 aaKnown RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 CD3EAPO15446 510 aaKnown RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 SLC7A4O43246 635 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 TYROBPO43914 113 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 HNRNPCL1O60812 293 aaKnown RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 ITGA10O75578 1167 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 RPP40O75818 363 aaKnown RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 HAUS5O94927 633 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 PAPSS2O95340 614 aaPredicted RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 TNFRSF6BO95407 300 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CLDN7O95471 211 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 GASTP01350 101 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 EPOP01588 193 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 TRBC1P01850 177 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 APOA4P06727 396 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CTSLP07711 333 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 SRPRAP08240 638 aaKnown RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 DLDP09622 509 aaKnown RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 PSMC3P17980 439 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CD9P21926 228 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 SERPINA4P29622 427 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 FOXN2P32314 431 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CA5AP35218 305 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 SPRP35270 261 aaPredicted RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 HNF1BP35680 557 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 OPRD1P41143 372 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 KCNJ5P48544 419 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CSNK1DP48730 415 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 SERPINB8P50452 374 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 METAP1P53582 386 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 LIMK2P53671 638 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 YBX1P67809 324 aaKnown RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 RAD51Q06609 339 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 FCHO2Q0JRZ9 810 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 HTR4Q13639 388 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 RUNX3Q13761 415 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 ZNF234Q14588 700 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 TAF1AQ15573 450 aaPredicted RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 TIGD6Q17RP2 521 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 AAK1Q2M2I8 961 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 ANKDD1AQ495B1 522 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 ZRANB3Q5FWF4 1079 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 RBM20Q5T481 1227 aaKnown RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 GRTP1Q5TC63 336 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 LGSNQ5TDP6 509 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 NEPROQ6NW34 567 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 PLBD1Q6P4A8 553 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 BORAQ6PGQ7 559 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 FAM151BQ6UXP7 276 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CDHR3Q6ZTQ4 885 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 SH2D5Q6ZV89 423 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CYS1Q717R9 158 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 RNF44Q7L0R7 432 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 NLRP9Q7RTR0 991 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CLEC14AQ86T13 490 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 TSPAN33Q86UF1 283 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 LRRTM4Q86VH4 590 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 ZC3HC1Q86WB0 502 aaKnown RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 PLXDC1Q8IUK5 500 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CNTN4Q8IWV2 1026 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 STK40Q8N2I9 435 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 ESX1Q8N693 406 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 ZNF557Q8N988 423 aaPredicted RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 BANPQ8N9N5 519 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 TERB1Q8NA31 727 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 SMRP1Q8NCR6 262 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 TNIP2Q8NFZ5 429 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 OR2A12Q8NGT7 310 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 OR4L1Q8NH43 312 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 OR56A3Q8NH54 315 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 DENND1AQ8TEH3 1009 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 WFIKKN2Q8TEU8 576 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 DYDC1Q8WWB3 177 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms