RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 CHRM4P08173 479 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 KRT3P12035 628 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 SKILP12757 684 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 PDGFRAP16234 1089 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 PRKCIP41743 596 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 CXCR3P49682 368 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 SULT1E1P49888 294 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 SGSHP51688 502 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 RPS24P62847 133 aaKnown RBP6.9□□□□□ -1.3
SDCBP-208ENST00000520228 PTP4A2Q12974 167 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 INPP5JQ15735 1006 aaPredicted RBP6.9□□□□□ -1.3
SDCBP-208ENST00000520228 MS4A13Q5J8X5 152 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 EOGTQ5NDL2 527 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 UBAP2Q5T6F2 1119 aaKnown RBP6.9□□□□□ -1.3
SDCBP-208ENST00000520228 TMEM268Q5VZI3 342 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 SPECC1LQ69YQ0 1117 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 PPP1R2P3Q6NXS1 205 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 DNAJC24Q6P3W2 148 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 B4GALNT4Q76KP1 1039 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 MON1BQ7L1V2 547 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 ZNF571Q7Z3V5 609 aaPredicted RBP6.9□□□□□ -1.3
SDCBP-208ENST00000520228 WDR5BQ86VZ2 330 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 LONP2Q86WA8 852 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 LGI2Q8N0V4 545 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 EMC1Q8N766 993 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 ZBTB44Q8NCP5 570 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 TSTD1Q8NFU3 115 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 UCMAQ8WVF2 138 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 RXFP2Q8WXD0 754 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 PGAP3Q96FM1 320 aaPredicted RBP6.9□□□□□ -1.3
SDCBP-208ENST00000520228 CFAP57Q96MR6 1250 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 SYT11Q9BT88 431 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 IFT27Q9BW83 186 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 MAP6D1Q9H9H5 199 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 ZDHHC4Q9NPG8 344 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 PIGVQ9NUD9 493 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 ABCB8Q9NUT2 735 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 MMP17Q9ULZ9 603 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 DHDHQ9UQ10 334 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 HS3ST3B1Q9Y662 390 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 BZW2Q9Y6E2 419 aaKnown RBP6.9□□□□□ -1.3
SDCBP-208ENST00000520228 WDFY4Q6ZS81 3184 aa6.9□□□□□ -1.31
SDCBP-208ENST00000520228 ZNF318Q5VUA4 2279 aa6.9□□□□□ -1.31
SDCBP-208ENST00000520228 PTPRDP23468 1912 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 GOLGA6L10A0A0M3HER8 536 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 SIGLEC16A6NMB1 481 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 TMCO5BA8MYB1 307 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 H0Y626 953 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 EPN2O95208 641 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 ADCY5O95622 1261 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 GYPCP04921 128 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 SERPING1P05155 500 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 TPM1P09493 284 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 GZMAP12544 262 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 TNFRSF1BP20333 461 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 RRM1P23921 792 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 HLA-FP30511 346 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 HOXC13P31276 330 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 SDC4P31431 198 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 CASP14P31944 242 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 RDXP35241 583 aaKnown RBP6.89□□□□□ -1.31
SDCBP-208ENST00000520228 RFC1P35251 1148 aaPredicted RBP6.89□□□□□ -1.31
SDCBP-208ENST00000520228 SKIV2L2P42285 1042 aaKnown RBP6.89□□□□□ -1.31
SDCBP-208ENST00000520228 CDH18Q13634 790 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 E2F5Q15329 346 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 BAK1Q16611 211 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 CCDC14Q49A88 953 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 TDRD12Q587J7 1177 aaKnown RBP6.89□□□□□ -1.31
SDCBP-208ENST00000520228 BRMS1LQ5PSV4 323 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 RABGAP1LQ5R372 815 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 OTUD1Q5VV17 481 aaPredicted RBP6.89□□□□□ -1.31
SDCBP-208ENST00000520228 HMBOX1Q6NT76 420 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 TRNP1Q6NT89 227 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 FBXL22Q6P050 247 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 VPS36Q86VN1 386 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 HEATR4Q86WZ0 1026 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 MFN1Q8IWA4 741 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 MCOLN2Q8IZK6 566 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 MMP21Q8N119 569 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 CARNMT1Q8N4J0 409 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 ZNF557Q8N988 423 aaPredicted RBP6.89□□□□□ -1.31
SDCBP-208ENST00000520228 ZNF548Q8NEK5 533 aaPredicted RBP6.89□□□□□ -1.31
SDCBP-208ENST00000520228 JOSD2Q8TAC2 188 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 OLIG1Q8TAK6 271 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 FIBINQ8TAL6 211 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 WFIKKN2Q8TEU8 576 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 ZNF419Q96HQ0 510 aaPredicted RBP6.89□□□□□ -1.31
SDCBP-208ENST00000520228 VCPIP1Q96JH7 1222 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 PPM1MQ96MI6 270 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 PRICKLE1Q96MT3 831 aaPredicted RBP6.89□□□□□ -1.31
SDCBP-208ENST00000520228 RPRD1AQ96P16 312 aaPredicted RBP6.89□□□□□ -1.31
SDCBP-208ENST00000520228 ACOX2Q99424 681 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 PRMT1Q99873 361 aaKnown RBP6.89□□□□□ -1.31
SDCBP-208ENST00000520228 TKTL2Q9H0I9 626 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 CXorf56Q9H5V9 222 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 ELOVL2Q9NXB9 296 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 ARHGEF38Q9NXL2 777 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 ALKBH4Q9NXW9 302 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 TAS2R14Q9NYV8 317 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 GGA2Q9UJY4 613 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms