RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 FPR1P21462 350 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 SEMA3AQ14563 771 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 TAF13Q15543 124 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 OR4D1Q15615 310 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 ATP13A5Q4VNC0 1218 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 PRR23CQ6ZRP0 262 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 LRRC70Q7Z2Q7 622 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 ISCA2Q86U28 154 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 PIGXQ8TBF5 258 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 RASSF5Q8WWW0 418 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 SLC45A3Q96JT2 553 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 SLC29A3Q9BZD2 475 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 GABRQQ9UN88 632 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 ING4Q9UNL4 249 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 ASCC3Q8N3C0 2202 aaKnown RBP12.34□□□□□ -0.43
USP53-209ENST00000514665 LRRC72A6NJI9 287 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 GNB5O14775 395 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 MPZL2O60487 215 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 SLC25A12O75746 678 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 SOX14O95416 240 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 ITGB1P05556 798 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 MAGEA11P43364 429 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 STK19P49842 368 aaPredicted RBP12.34□□□□□ -0.43
USP53-209ENST00000514665 TUBA4AP68366 448 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 MEF2AQ02078 507 aaPredicted RBP12.34□□□□□ -0.43
USP53-209ENST00000514665 TOMM20Q15388 145 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 TRNP1Q6NT89 227 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 NEK5Q6P3R8 708 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 TICAM1Q8IUC6 712 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 TTC9BQ8N6N2 239 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 PPP1R14AQ96A00 147 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 TBX5Q99593 518 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 ITM2CQ9NQX7 267 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 A0A0U1RQS6 177 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 KHDRBS3O75525 346 aaKnown RBP12.33□□□□□ -0.44
USP53-209ENST00000514665 INMTO95050 263 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 SDC2P34741 201 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 OR1E2P47887 323 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 CLCNKAP51800 687 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 AFF1P51825 1210 aaKnown RBP12.33□□□□□ -0.44
USP53-209ENST00000514665 TAS2R50P59544 299 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 DSTNP60981 165 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 RPS3AP61247 264 aaKnown RBP12.33□□□□□ -0.44
USP53-209ENST00000514665 MYBPC1Q00872 1141 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 CYP27C1Q4G0S4 372 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 C2orf27AQ580R0 203 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 PRAMEF14Q5SWL7 426 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 PRAMEF13Q5VWM6 474 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 IQCHQ86VS3 1027 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 OR10H4Q8NGA5 316 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 RHCGQ9UBD6 479 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 PTBP2Q9UKA9 531 aaKnown RBP12.33□□□□□ -0.44
USP53-209ENST00000514665 UBE2QL1A1L167 161 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 FABP12A6NFH5 140 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 ARHGEF33A8MVX0 844 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 K7ERQ8 282 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 INPPL1O15357 1258 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 BCHEP06276 602 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 SLC35G6P0C7Q6 338 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 PCSK2P16519 638 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 CMPK1P30085 196 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 IST1P53990 364 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 SEC13P55735 322 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 RPL26P61254 145 aaKnown RBP12.33□□□□□ -0.44
USP53-209ENST00000514665 RPS13P62277 151 aaKnown RBP12.33□□□□□ -0.44
USP53-209ENST00000514665 NFATC2Q13469 925 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 ZNF423Q2M1K9 1284 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 KIAA1161Q6NSJ0 714 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 MARVELD2Q8N4S9 558 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 NFKBIDQ8NI38 313 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 RHEBL1Q8TAI7 183 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 FCGR1BQ92637 280 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 ZNF641Q96N77 438 aaPredicted RBP12.33□□□□□ -0.44
USP53-209ENST00000514665 DPEP2Q9H4A9 486 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 TAC3Q9UHF0 121 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 RIMKLBQ9ULI2 386 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 ZNF451Q9Y4E5 1061 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 MYADML2A6NDP7 307 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 ZNF623O75123 536 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 RLN1P04808 185 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 GALTP07902 379 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 OMPP47874 163 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 NCBP2P52298 156 aaKnown RBP eCLIP12.33□□□□□ -0.446e-8■■■■■ 32.2
USP53-209ENST00000514665 ZNF155Q12901 538 aaPredicted RBP12.33□□□□□ -0.44
USP53-209ENST00000514665 PLEKHG6Q3KR16 790 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 MINDY4Q4G0A6 757 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 PDCD4Q53EL6 469 aaKnown RBP12.33□□□□□ -0.44
USP53-209ENST00000514665 C22orf39Q6P5X5 142 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 FAM171BQ6P995 826 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 KLHL35Q6PF15 583 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 ZNF773Q6PK81 442 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 CPA6Q8N4T0 437 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 ZNF563Q8TA94 476 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 NRG4Q8WWG1 115 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 WDR6Q9NNW5 1121 aaKnown RBP12.33□□□□□ -0.44
USP53-209ENST00000514665 SRRDQ9UH36 339 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 ACTL7AQ9Y615 435 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 LTBP3Q9NS15 1303 aa12.33□□□□□ -0.44
USP53-209ENST00000514665 IRGMA1A4Y4 181 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 SMIM30A4D0T7 59 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms