RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PSPHP78330 225 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF699Q32M78 642 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 SPATS1Q496A3 300 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 FAM74A3Q4VXF1 159 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 LRRC66Q68CR7 880 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 MZT2BQ6NZ67 158 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 C18orf25Q96B23 403 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 HTATIP2Q9BUP3 242 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 SIRT5Q9NXA8 310 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 GLS2Q9UI32 602 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 NDRG2Q9UN36 371 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 TMX2Q9Y320 296 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 MROH6A6NGR9 719 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 GPX5O75715 221 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 MATN4O95460 622 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 PAMP19021 973 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 IDH2P48735 452 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 CLDN10P78369 228 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 TBCEQ15813 527 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 PROX2Q3B8N5 592 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 TAS1R3Q7RTX0 852 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 DNAJC5GQ8N7S2 189 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 KCT2Q8NC54 265 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 ARRDC4Q8NCT1 418 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 COQ10AQ96MF6 247 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 CSPG4P5Q96PW8 444 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 SLC52A3Q9NQ40 469 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 KRT84Q9NSB2 600 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF112Q9UJU3 913 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 FBXL2Q9UKC9 423 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 NUP98P52948 1817 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 GNB5O14775 395 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 MFSD11O43934 449 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 VPS26AO75436 327 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 CELF2O95319 508 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 PRKAR1AP10644 381 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 SLC2A2P11168 524 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF3P17036 446 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 CRYZQ08257 329 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 CARD16Q5EG05 197 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 MFSD14BQ5SR56 506 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF57Q68EA5 555 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 RRM2BQ7LG56 351 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 LUZP2Q86TE4 346 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 TSPYL5Q86VY4 417 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 FAM126BQ8IXS8 530 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 EFHBQ8N7U6 833 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 GGHQ92820 318 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 RHBDF1Q96CC6 855 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 ZBED6CLQ96FA7 236 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 NSUN5Q96P11 429 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 PARK7Q99497 189 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 ZBTB18Q99592 522 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 SLC19A3Q9BZV2 496 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 TUBB1Q9H4B7 451 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 PRDM12Q9H4Q4 367 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 GPR45Q9Y5Y3 372 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 IRS2Q9Y4H2 1338 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 SCN4AP35499 1836 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 SYNJ2BP-COX16A0A087WUM0 186 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 EEDO75530 441 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 ATG12O94817 140 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 HAPLN1P10915 354 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 TNFSF9P41273 254 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 RPS7P62081 194 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 ST3GAL4Q11206 333 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 KEAP1Q14145 624 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 RCAN2Q14206 197 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 LGALSLQ3ZCW2 172 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 TECRLQ5HYJ1 363 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 NCBP2-AS2Q69YL0 99 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 KIAA0907Q7Z7F0 614 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 JAZF1Q86VZ6 243 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 RNF130Q86XS8 419 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 PSTKQ8IV42 348 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 ENTHD1Q8IYW4 607 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 TMEM130Q8N3G9 435 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF655Q8N720 491 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 C12orf29Q8N999 325 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 OR52N1Q8NH53 320 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 CXorf58Q96LI9 332 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 MGLLQ99685 303 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 ACTR6Q9GZN1 396 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 RBFOX1Q9NWB1 397 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 KCMF1Q9P0J7 381 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 COX16Q9P0S2 106 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 PADI2Q9Y2J8 665 aa11.72□□□□□ -0.53
LIMCH1-213ENST00000511496 MRPS14O60783 128 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 MMP20O60882 483 aa11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 SYPP08247 313 aa11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 MCCD1P59942 119 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 CELF3Q5SZQ8 465 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 KIAA1614Q5VZ46 1190 aa11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 ZZZ3Q8IYH5 903 aa11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 DCAF4Q8WV16 495 aa11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 APH1BQ8WW43 257 aa11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF583Q96ND8 569 aa11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 RIT2Q99578 217 aa11.71□□□□□ -0.53
LIMCH1-213ENST00000511496 RTP3Q9BQQ7 232 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms