RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 OR9I1Q8NGQ6 314 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 SGCDQ92629 289 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 DTD2Q96FN9 168 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 NSMCE4AQ9NXX6 385 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 CD274Q9NZQ7 290 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 OAS3Q9Y6K5 1087 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 PI4KAP42356 2102 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 CDC7O00311 574 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 EI24O14681 340 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 TSPAN4O14817 238 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 RFPL1O75677 317 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 NCK1P16333 377 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 IL7RP16871 459 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 CLCN5P51795 746 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 SLC7A2P52569 658 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 SLC18A2Q05940 514 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 FGL2Q14314 439 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 PHKG1Q16816 387 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 FAM209AQ5JX71 171 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 DEPDC1Q5TB30 811 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 SPATC1Q76KD6 591 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 HORMAD1Q86X24 394 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 TBC1D15Q8TC07 691 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 HEXDCQ8WVB3 486 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 PCNPQ8WW12 178 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 FUBP1Q96AE4 644 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 TMEM159Q96B96 161 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 RANBP9Q96S59 729 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 EFCAB1Q9HAE3 211 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 AASSQ9UDR5 926 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 RNF112Q9ULX5 631 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 SATB2Q9UPW6 733 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 SNX5Q9Y5X3 404 aa8.44□□□□□ -1.06
LIMCH1-209ENST00000509277 ZFHX2Q9C0A1 2572 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 SOCS2O14508 198 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 AREL1O15033 823 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 PAPSS2O95340 614 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 TSNQ15631 228 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 MBOAT1Q6ZNC8 495 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 ADCY4Q8NFM4 1077 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 MCCC1Q96RQ3 725 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 ROGDIQ9GZN7 287 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 RBM38Q9H0Z9 239 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 RPF2Q9H7B2 306 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 C12orf4Q9NQ89 552 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 FSCN3Q9NQT6 498 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 ZDHHC3Q9NYG2 299 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 GNPTGQ9UJJ9 305 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 SLCO1B1Q9Y6L6 691 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 SHISA7A6NL88 538 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 CACNB4O00305 520 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 FPGTO14772 594 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 RGS5O15539 181 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 SPINT1O43278 529 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 SH3BGRLO75368 114 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 RSL1D1O76021 490 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 TGDSO95455 350 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 CDH1P12830 882 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 ATP1B2P14415 290 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 AZGP1P25311 298 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 GTF2E2P29084 291 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 HPCAL1P37235 193 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 ETV4P43268 484 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 CDH13P55290 713 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 CTBSQ01459 385 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 NFE2L1Q14494 772 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 ADRM1Q16186 407 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 PFKFB4Q16877 469 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 FAM83EQ2M2I3 478 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 CCDC58Q4VC31 144 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 FAM45BPQ6NSW5 357 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 KYAT3Q6YP21 454 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 PLD3Q8IV08 490 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 CADM2Q8N3J6 435 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 FAM45AQ8TCE6 357 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 UBASH3BQ8TF42 649 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 BIRC7Q96CA5 298 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 RNF31Q96EP0 1072 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 TSPAN17Q96FV3 270 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 GABRG3Q99928 467 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 COPS4Q9BT78 406 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 ZSCAN5AQ9BUG6 496 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 ACAT2Q9BWD1 397 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 NMRAL1Q9HBL8 299 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 PHPT1Q9NRX4 125 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 IMP3Q9NV31 184 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 OAZ3Q9UMX2 235 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 U3KQV3 271 aa8.43□□□□□ -1.06
LIMCH1-209ENST00000509277 KNTC1P50748 2209 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 ALBP02768 609 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 SERPINE1P05121 402 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 CFIP05156 583 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 AK4P27144 223 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 NSG1P42857 185 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 PTGER3P43115 390 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 IL2P60568 153 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 PSME3P61289 254 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 EPS8Q12929 822 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 CYP51A1Q16850 503 aa8.42□□□□□ -1.06
LIMCH1-209ENST00000509277 LSM12Q3MHD2 195 aaKnown RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms