RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 ISLR2Q6UXK2 745 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 LINC00696Q6ZRV3 163 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 CENPUQ71F23 418 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 KCNMB4Q86W47 210 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 ST6GALNAC3Q8NDV1 305 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 GRHL3Q8TE85 626 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 SMPDL3AQ92484 453 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 C8orf44Q96CB5 159 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 TCF12Q99081 682 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 PKP4Q99569 1192 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 PLCD4Q9BRC7 762 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 TRIM56Q9BRZ2 755 aaKnown RBP11□□□□□ -0.65
HMGCS1-204ENST00000507293 MRPS30Q9NP92 439 aaKnown RBP11□□□□□ -0.65
HMGCS1-204ENST00000507293 FAM114A2Q9NRY5 505 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 TAC3Q9UHF0 121 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 ZGRF1Q86YA3 2104 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 CACNA1DQ01668 2161 aa11□□□□□ -0.65
HMGCS1-204ENST00000507293 IGLV3-12A0A075B6K2 115 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 IGKV1-8A0A0C4DH67 115 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 E5RI56 91 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 PHF2O75151 1096 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 AVILO75366 819 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 VPS26AO75436 327 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 PSIP1O75475 530 aaKnown RBP10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 KLHL18O94889 574 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 CATP04040 527 aaKnown RBP10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 F7P08709 466 aaPredicted RBP10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 COX6A1P12074 109 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 PAMP19021 973 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 CXCR5P32302 372 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 DCTP40126 519 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 ADARP55265 1226 aaKnown RBP10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 TLR1Q15399 786 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 HKDC1Q2TB90 917 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 ANKRD22Q5VYY1 191 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 B3GNTL1Q67FW5 361 aaPredicted RBP10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 ZNF470Q6ECI4 717 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 ZNF425Q6IV72 752 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 NEPROQ6NW34 567 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 CASC4Q6P4E1 433 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 LAPTM4BQ86VI4 370 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 PAQR7Q86WK9 346 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 CILP2Q8IUL8 1156 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 SPNS2Q8IVW8 549 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 CSNK1A1LQ8N752 337 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 PRELID2Q8N945 189 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 PPFIBP2Q8ND30 876 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 COG1Q8WTW3 980 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 ZNF669Q96BR6 464 aaPredicted RBP10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 SLC30A3Q99726 388 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 YIPF2Q9BWQ6 316 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 ABCF3Q9NUQ8 709 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 TRPC4Q9UBN4 977 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 CDC14AQ9UNH5 594 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 RUVBL1Q9Y265 456 aaKnown RBP10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 DOPEY1Q5JWR5 2465 aa10.99□□□□□ -0.65
HMGCS1-204ENST00000507293 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 NSG1A0A0A6YYJ2 146 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 PRPF4O43172 522 aaKnown RBP eCLIP10.98□□□□□ -0.655e-9■□□□□ 8.4
HMGCS1-204ENST00000507293 USP1O94782 785 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 CCNDBP1O95273 360 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 SYF2O95926 243 aaKnown RBP10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 CCDC175P0C221 793 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 MAGEA6P43360 314 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 CLCN7P51798 805 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 PNLIPRP1P54315 467 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 EMP2P54851 167 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 EMP3P54852 163 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 SARNPP82979 210 aaKnown RBP10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 EEF1A2Q05639 463 aaKnown RBP10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 GPS1Q13098 491 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 CUL1Q13616 776 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 DSG2Q14126 1118 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 DHX34Q14147 1143 aaKnown RBP10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 ARHGAP19Q14CB8 494 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 TTLL9Q3SXZ7 439 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 ICE2Q659A1 982 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 ATG9BQ674R7 924 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 FAAH2Q6GMR7 532 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 ZNF662Q6ZS27 426 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 CAND1Q86VP6 1230 aaKnown RBP10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 REXO1L1PQ8IX06 675 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 KBTBD2Q8IY47 623 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 AMER3Q8N944 861 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 CATSPER1Q8NEC5 780 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 GIMAP7Q8NHV1 300 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 MVB12AQ96EY5 273 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 OR2A5Q96R48 311 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 LMF1Q96S06 567 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 HOMER3Q9NSC5 361 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 C14orf105Q9NVL8 296 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 INTS10Q9NVR2 710 aaKnown RBP10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 SAMD15Q9P1V8 674 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 PCYOX1Q9UHG3 505 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 VPS9D1Q9Y2B5 631 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 CNTRLQ7Z7A1 2325 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 UNC79Q9P2D8 2635 aa10.98□□□□□ -0.65
HMGCS1-204ENST00000507293 SVILO95425 2214 aa10.97□□□□□ -0.65
HMGCS1-204ENST00000507293 A0A0A6YYC8 382 aaPredicted RBP10.97□□□□□ -0.65
HMGCS1-204ENST00000507293 FAM237BA0A1B0GVD1 139 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms