RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 OR2A1Q8NGT9 310 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 RDH11Q8TC12 318 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 TCP10LQ8TDR4 215 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 PPP4R1Q8TF05 950 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 SREK1Q8WXA9 508 aaKnown RBP9.92□□□□□ -0.82
SKA1-204ENST00000488454 ZUFSPQ96AP4 578 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 CMKLR1Q99788 373 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 SGPP1Q9BX95 441 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 PDE7BQ9NP56 450 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 SSU72Q9NP77 194 aaKnown RBP9.92□□□□□ -0.82
SKA1-204ENST00000488454 SOHLH2Q9NX45 425 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 TMEM9Q9P0T7 183 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 PDP2Q9P2J9 529 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 OPTCQ9UBM4 332 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 TAC3Q9UHF0 121 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 SNX7Q9UNH6 387 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 SLC22A14Q9Y267 594 aa9.92□□□□□ -0.82
SKA1-204ENST00000488454 IGHV5-51A0A0C4DH38 117 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 A0A1W2PPV9 198 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 SLC9B1P1A6NJY1 282 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 TARM1B6A8C7 271 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 STX16-NPEPL1H3BU86 382 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 K7EPI3 171 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 STX16O14662 325 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 CLGNO14967 610 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 CASC3O15234 703 aaKnown RBP9.91□□□□□ -0.82
SKA1-204ENST00000488454 TM9SF1O15321 606 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 TAPBPO15533 448 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 KIF1CO43896 1103 aaKnown RBP9.91□□□□□ -0.82
SKA1-204ENST00000488454 PRICKLE3O43900 615 aaPredicted RBP9.91□□□□□ -0.82
SKA1-204ENST00000488454 KLK8O60259 260 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 PLIN3O60664 434 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 H2AFYO75367 372 aaKnown RBP9.91□□□□□ -0.82
SKA1-204ENST00000488454 SASH3O75995 380 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 ZWINTO95229 277 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 PROCP04070 461 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 THRAP10827 490 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 MTHFD2P13995 350 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 CREB1P16220 341 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 NPPBP16860 134 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 PEBP1P30086 187 aaKnown RBP9.91□□□□□ -0.82
SKA1-204ENST00000488454 CCKBRP32239 447 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 GDF5P43026 501 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 PIK3CGP48736 1102 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 PPP1CAP62136 330 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 HSD11B2P80365 405 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 ASPHQ12797 758 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 TARDBPQ13148 414 aaKnown RBP eCLIP9.91□□□□□ -0.82
SKA1-204ENST00000488454 SETDB1Q15047 1291 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 PDK4Q16654 411 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 C18orf21Q32NC0 220 aaPredicted RBP9.91□□□□□ -0.82
SKA1-204ENST00000488454 HSP90B2PQ58FF3 399 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 ICE2Q659A1 982 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 METTL2BQ6P1Q9 378 aaKnown RBP9.91□□□□□ -0.82
SKA1-204ENST00000488454 CYB5D1Q6P9G0 228 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 FIGLAQ6QHK4 219 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 LCTLQ6UWM7 567 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 LRRC70Q7Z2Q7 622 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 TMPRSS9Q7Z410 1059 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 PRSS42Q7Z5A4 293 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 ARHGAP22Q7Z5H3 698 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 ADCK2Q7Z695 626 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 TRIM73Q86UV7 250 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 SLITRK4Q8IW52 837 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 LRRC56Q8IYG6 542 aaPredicted RBP9.91□□□□□ -0.82
SKA1-204ENST00000488454 CHCHD4Q8N4Q1 142 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 TBC1D19Q8N5T2 526 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 DCBLD1Q8N8Z6 715 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 AGBL5Q8NDL9 886 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 RCBTB1Q8NDN9 531 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 OR2L3Q8NG85 312 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 N4BP2L2Q92802 583 aaPredicted RBP9.91□□□□□ -0.82
SKA1-204ENST00000488454 ESAMQ96AP7 390 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 TCTN2Q96GX1 697 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 ATP6V1G3Q96LB4 118 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 FAM111AQ96PZ2 611 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 TRAPPC9Q96Q05 1148 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 PITPNM3Q9BZ71 974 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 ZNF768Q9H5H4 540 aaKnown RBP9.91□□□□□ -0.82
SKA1-204ENST00000488454 DNAJC11Q9NVH1 559 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 NKIRAS1Q9NYS0 192 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 PIEZO1Q92508 2521 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 PCNX2A6NKB5 2137 aa9.91□□□□□ -0.82
SKA1-204ENST00000488454 A8MT66 165 aa9.9□□□□□ -0.82
SKA1-204ENST00000488454 HMGB1P1B2RPK0 211 aaPredicted RBP9.9□□□□□ -0.82
SKA1-204ENST00000488454 AGRPO00253 132 aa9.9□□□□□ -0.82
SKA1-204ENST00000488454 HGSO14964 777 aaPredicted RBP9.9□□□□□ -0.82
SKA1-204ENST00000488454 PRPF4O43172 522 aaKnown RBP eCLIP9.9□□□□□ -0.82
SKA1-204ENST00000488454 TYROBPO43914 113 aa9.9□□□□□ -0.82
SKA1-204ENST00000488454 DLX3O60479 287 aa9.9□□□□□ -0.82
SKA1-204ENST00000488454 KATNA1O75449 491 aa9.9□□□□□ -0.82
SKA1-204ENST00000488454 ANKRD34CP0C6C1 535 aa9.9□□□□□ -0.82
SKA1-204ENST00000488454 NEFHP12036 1026 aa9.9□□□□□ -0.82
SKA1-204ENST00000488454 ST6GAL1P15907 406 aa9.9□□□□□ -0.82
SKA1-204ENST00000488454 EPB42P16452 691 aa9.9□□□□□ -0.82
SKA1-204ENST00000488454 GNAZP19086 355 aa9.9□□□□□ -0.82
SKA1-204ENST00000488454 PSMB5P28074 263 aa9.9□□□□□ -0.82
SKA1-204ENST00000488454 EEF1DP29692 281 aaKnown RBP9.9□□□□□ -0.82
SKA1-204ENST00000488454 GRK3P35626 688 aa9.9□□□□□ -0.82
SKA1-204ENST00000488454 GRIA3P42263 894 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms