RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FAR1Q8WVX9 515 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 MRPS31Q92665 395 aaKnown RBP17.41■□□□□ 0.38
VIM-206ENST00000487938 PRM3Q9NNZ6 103 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 PCDH12Q9NPG4 1184 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 TBCCD1Q9NVR7 557 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 KLHL42Q9P2K6 505 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 ENPP5Q9UJA9 477 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 TMED5Q9Y3A6 229 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 GFYI3L273 518 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 FKBP9O95302 570 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 COX7A2P14406 83 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 CD22P20273 847 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 CYP2A7P20853 494 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 EPHA2P29317 976 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 ARHGDIAP52565 204 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 WNT3P56703 355 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 LSM3P62310 102 aaKnown RBP17.4■□□□□ 0.38
VIM-206ENST00000487938 GBX1Q14549 363 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 NPTX1Q15818 432 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 ZC3H12BQ5HYM0 836 aaKnown RBP17.4■□□□□ 0.38
VIM-206ENST00000487938 TTC23LQ6PF05 361 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 B3GNT8Q7Z7M8 397 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 SERPINA11Q86U17 422 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 ZZZ3Q8IYH5 903 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 FAM9CQ8IZT9 166 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 SLC39A11Q8N1S5 342 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 CENPSQ8N2Z9 138 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 TRUB1Q8WWH5 349 aaKnown RBP17.4■□□□□ 0.38
VIM-206ENST00000487938 ELMO1Q92556 727 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 FOXJ1Q92949 421 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 ZNF558Q96NG5 402 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 RHNO1Q9BSD3 238 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 PDP1Q9P0J1 537 aaPredicted RBP17.4■□□□□ 0.38
VIM-206ENST00000487938 A0A1W2PRU2 124 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 OR2AG2A6NM03 316 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 TOR1BO14657 336 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 TEX28O15482 410 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 UGT2B11O75310 529 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 CCDC159P0C7I6 412 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 OCM2P0CE71 109 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 OCMP0CE72 109 aaPredicted RBP17.4■□□□□ 0.38
VIM-206ENST00000487938 ITGAMP11215 1152 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 JUPP14923 745 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 KDELR2P33947 212 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 PHEXP78562 749 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 IRF8Q02556 426 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 ABRQ12979 859 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 CTF1Q16619 201 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 SMN1Q16637 294 aaKnown RBP17.4■□□□□ 0.38
VIM-206ENST00000487938 VMACQ2NL98 169 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 XKR6Q5GH73 641 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 ASTLQ6HA08 431 aaPredicted RBP17.4■□□□□ 0.38
VIM-206ENST00000487938 FBLIM1Q8WUP2 373 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 UBE2FQ969M7 185 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 HHIPQ96QV1 700 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 BTBD3Q9Y2F9 522 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 PPIL1Q9Y3C6 166 aa17.4■□□□□ 0.38
VIM-206ENST00000487938 CFAP99D6REC4 459 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 BOLA2-SMG1P6H3BVE0 249 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 SCN2BO60939 215 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 CXCL10P02778 98 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 FABP3P05413 133 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 MPC1LP0DKB6 136 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 ZNF12P17014 697 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 PRPS1L1P21108 318 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 OPRL1P41146 370 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 IL18R1Q13478 541 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 MPP7Q5T2T1 576 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 CCDC81Q6ZN84 652 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 Q6ZVU0 165 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 METTL3Q86U44 580 aaKnown RBP17.39■□□□□ 0.37
VIM-206ENST00000487938 PTOV1Q86YD1 416 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 ANKRD13BQ86YJ7 626 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 CPXM2Q8N436 756 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 TPD52L3Q96J77 140 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 MCCC1Q96RQ3 725 aaPredicted RBP17.39■□□□□ 0.37
VIM-206ENST00000487938 TM9SF3Q9HD45 589 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 DOLKQ9UPQ8 538 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 NAALAD2Q9Y3Q0 740 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 GMPPBQ9Y5P6 360 aa17.39■□□□□ 0.37
VIM-206ENST00000487938 TMEM202A6NGA9 273 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 MAGEB17A8MXT2 336 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 LEFTY2O00292 366 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 EPN2O95208 641 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 LAMP1P11279 417 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 ALDH4A1P30038 563 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 CD6P30203 668 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 TRPC1P48995 793 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 MTAPQ13126 283 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 KDM4DQ6B0I6 523 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 ADNP2Q6IQ32 1131 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 PDE12Q6L8Q7 609 aaKnown RBP17.38■□□□□ 0.37
VIM-206ENST00000487938 BTLAQ7Z6A9 289 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 HORMAD1Q86X24 394 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 CSGALNACT1Q8TDX6 532 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 PPP1R14BQ96C90 147 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 LMLNQ96KR4 655 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 E7EQ34 232 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 EIF3FO00303 357 aaPredicted RBP17.38■□□□□ 0.37
VIM-206ENST00000487938 NUDT7P0C024 238 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms