RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 DDX25Q9UHL0 483 aaKnown RBP5.32□□□□□ -1.56
USP40-213ENST00000483216 MAGED1Q9Y5V3 778 aaPredicted RBP5.32□□□□□ -1.56
USP40-213ENST00000483216 CEP170BQ9Y4F5 1589 aaPredicted RBP5.32□□□□□ -1.56
USP40-213ENST00000483216 STRCQ7RTU9 1775 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 RGS12O14924 1447 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 TECPR2O15040 1411 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 CDC42BPGQ6DT37 1551 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 hCG_1809904A0A1W2PP81 198 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 A0A1W2PPE2 198 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 A0A1W2PR64 198 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 STX6O43752 255 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 TOM1O60784 492 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 RPS6KA5O75582 802 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 LINGO3P0C6S8 592 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 CCDC172P0C7W6 258 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 PFKFB1P16118 471 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 ZNF26P17031 533 aaPredicted RBP5.31□□□□□ -1.56
USP40-213ENST00000483216 CA6P23280 308 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 DNASE1P24855 282 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 ERVK11-1P61568 191 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 ZSCAN26Q16670 478 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 FAM198BQ6UWH4 519 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 ENOSF1Q7L5Y1 443 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 CFAP206Q8IYR0 622 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 NPEPL1Q8NDH3 523 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 ZNF248Q8NDW4 579 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 DHX58Q96C10 678 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 APOL6Q9BWW8 343 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 TNMDQ9H2S6 317 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 ZSCAN16Q9H4T2 348 aaPredicted RBP5.31□□□□□ -1.56
USP40-213ENST00000483216 MED4Q9NPJ6 270 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 ANO10Q9NW15 660 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 SPHK1Q9NYA1 384 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 CLIP2Q9UDT6 1046 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 RSPH14Q9UHP6 348 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 ANAPC2Q9UJX6 822 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 FAM169AQ9Y6X4 670 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 CPS1P31327 1500 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 UBR1Q8IWV7 1749 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 PTCH1Q13635 1447 aa5.31□□□□□ -1.56
USP40-213ENST00000483216 RTL1A6NKG5 1358 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 TMEM2Q9UHN6 1383 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 PHLPP2Q6ZVD8 1323 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 TCRBV21S2A2A0A5A6 115 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 ZNF197O14709 1029 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 AP2A2O94973 939 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 SMC2O95347 1197 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 NEFHP12036 1026 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 RDXP35241 583 aaKnown RBP5.3□□□□□ -1.56
USP40-213ENST00000483216 HSPB3Q12988 150 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 FFAR4Q5NUL3 377 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 CFAP58Q5T655 872 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 CYP4A22Q5TCH4 519 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 ARHGEF16Q5VV41 709 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 GPR139Q6DWJ6 353 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 ZSCAN25Q6NSZ9 544 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 ZNF790Q6PG37 636 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 NUDT13Q86X67 352 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 TMEM139Q8IV31 216 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 ANKRD20A12PQ8NF67 263 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 HCAR2Q8TDS4 363 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 HPSE2Q8WWQ2 592 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 SPDL1Q96EA4 605 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 ZNF830Q96NB3 372 aaPredicted RBP5.3□□□□□ -1.56
USP40-213ENST00000483216 CCDC106Q9BWC9 280 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 S1PR5Q9H228 398 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 GOLPH3LQ9H4A5 285 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 INTS9Q9NV88 658 aaKnown RBP5.3□□□□□ -1.56
USP40-213ENST00000483216 HAO2Q9NYQ3 351 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 RIPK3Q9Y572 518 aa5.3□□□□□ -1.56
USP40-213ENST00000483216 NPHP4O75161 1426 aaPredicted RBP5.3□□□□□ -1.56
USP40-213ENST00000483216 EDC4Q6P2E9 1401 aaKnown RBP5.3□□□□□ -1.56
USP40-213ENST00000483216 METP08581 1390 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 PNPLA6Q8IY17 1366 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 ABCC4O15439 1325 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 TTC41PQ6P2S7 1318 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 PCDH11YQ9BZA8 1340 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 MON2Q7Z3U7 1717 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 ZNF142P52746 1687 aaPredicted RBP5.29□□□□□ -1.56
USP40-213ENST00000483216 A0A087X002 238 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 TRMUO75648 421 aaKnown RBP5.29□□□□□ -1.56
USP40-213ENST00000483216 SKILP12757 684 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 H2AFXP16104 143 aaPredicted RBP5.29□□□□□ -1.56
USP40-213ENST00000483216 VEGFCP49767 419 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 ZNF75DP51815 510 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 CDR2Q01850 454 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 SLMAPQ14BN4 828 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 FCN2Q15485 313 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 TEAD2Q15562 447 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 STX1AQ16623 288 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 ITPRIPL2Q3MIP1 535 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 DNAJC21Q5F1R6 531 aaKnown RBP5.29□□□□□ -1.56
USP40-213ENST00000483216 ELFN2Q5R3F8 820 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 CCDC186Q7Z3E2 898 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 PIGZQ86VD9 579 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 LRRC8AQ8IWT6 810 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 ZNF611Q8N823 705 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 CEP112Q8N8E3 955 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 POMGNT2Q8NAT1 580 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 CCDC191Q8NCU4 936 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms