RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 GFYI3L273 518 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PHF2O75151 1096 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 HPP00738 406 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PKMP14618 531 aaKnown RBP11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SLC26A3P40879 764 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MAGEA3P43357 314 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 GLRBP48167 497 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CARSP49589 748 aaKnown RBP11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 NAA25Q14CX7 972 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MUM1Q2TAK8 710 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 KLHL38Q2WGJ6 581 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ANKRD20A4Q4UJ75 823 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 VWA2Q5GFL6 755 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 B3GNTL1Q67FW5 361 aaPredicted RBP11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ZNF324BQ6AW86 544 aaPredicted RBP11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 NEPROQ6NW34 567 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 RPUSD3Q6P087 351 aaKnown RBP11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MAMDC2Q7Z304 686 aaPredicted RBP11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PARP9Q8IXQ6 854 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 RAB42Q8N4Z0 105 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 METTL27Q8N6F8 245 aaPredicted RBP11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 GSDMBQ8TAX9 411 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 DNAJB14Q8TBM8 379 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ASB11Q8WXH4 323 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SMPDL3AQ92484 453 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MVB12AQ96EY5 273 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PKP4Q99569 1192 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SLC30A3Q99726 388 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TGIF2Q9GZN2 237 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 HOMER3Q9NSC5 361 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 STOX2Q9P2F5 926 aaPredicted RBP11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ZNF282Q9UDV7 671 aaPredicted RBP11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 FAM169AQ9Y6X4 670 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CROCCQ5TZA2 2017 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PCNX1Q96RV3 2341 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SCN3AQ9NY46 2000 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MAGEB16A2A368 324 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 E7ENX8 843 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 FOXS1O43638 330 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 COX6A1P12074 109 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MLNP12872 115 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CMPK1P30085 196 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SOX11P35716 441 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 HSD17B2P37059 387 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 EFNA3P52797 238 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TAP2Q03519 686 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MFAP5Q13361 173 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 DSG2Q14126 1118 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 RBBP7Q16576 425 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ANKRD22Q5VYY1 191 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ZNF549Q6P9A3 640 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SUSD1Q6UWL2 747 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ISLR2Q6UXK2 745 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 GSTA5Q7RTV2 222 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SPNS2Q8IVW8 549 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 REXO1L1PQ8IX06 675 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 AGGF1Q8N302 714 aaeCLIP11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 RASGEF1CQ8N431 466 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 AMER3Q8N944 861 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MCUQ8NE86 351 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 GIMAP7Q8NHV1 300 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ZNF480Q8WV37 535 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SKA2Q8WVK7 121 aaPredicted RBP11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 FAR1Q8WVX9 515 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MIEF2Q96C03 454 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 THOC3Q96J01 351 aaKnown RBP11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 VPS50Q96JG6 964 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CRB3Q9BUF7 120 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ACAT2Q9BWD1 397 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MRPS30Q9NP92 439 aaKnown RBP11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 INTS10Q9NVR2 710 aaKnown RBP11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 C3orf18Q9UK00 162 aa11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 RUVBL1Q9Y265 456 aaKnown RBP11.66□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CSMD1Q96PZ7 3565 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 LOC102723996A0A087X1L8 192 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 A1L4Q6 167 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SLC16A8O95907 504 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CHRM3P20309 590 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 COL8A1P27658 744 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SKIV2L2P42285 1042 aaKnown RBP11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PNLIPRP1P54315 467 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SNRPNP63162 240 aaKnown RBP11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TIAL1Q01085 375 aaKnown RBP eCLIP11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 OCA2Q04671 838 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 FAM53BQ14153 422 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ZNF169Q14929 603 aaPredicted RBP11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TLR1Q15399 786 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 HKDC1Q2TB90 917 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 GARNL3Q5VVW2 1013 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ICE2Q659A1 982 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TTC27Q6P3X3 843 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TMEM205Q6UW68 189 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 NDUFAF7Q7L592 441 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CATSPER1Q8NEC5 780 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TRIM58Q8NG06 486 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 GRHL3Q8TE85 626 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 HAS2Q92819 552 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 FAM136AQ96C01 138 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 C8orf44Q96CB5 159 aa11.65□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 C5orf34Q96MH7 638 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms