RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 TTLL9Q3SXZ7 439 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 ZNF470Q6ECI4 717 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 NEPROQ6NW34 567 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 BARD1Q99728 777 aaKnown RBP18.84■□□□□ 0.61
COL9A3-210ENST00000472880 PLCD4Q9BRC7 762 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 UTP6Q9NYH9 597 aaKnown RBP18.84■□□□□ 0.61
COL9A3-210ENST00000472880 STOX2Q9P2F5 926 aaPredicted RBP18.84■□□□□ 0.61
COL9A3-210ENST00000472880 GALPQ9UBC7 116 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 CDC14AQ9UNH5 594 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 PRRC2CQ9Y520 2896 aaKnown RBP18.84■□□□□ 0.61
COL9A3-210ENST00000472880 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.83■□□□□ 0.6
COL9A3-210ENST00000472880 H0YGG7 62 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 USP1O94782 785 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 LDLRP01130 860 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 HSD17B2P37059 387 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 TSFMP43897 325 aaKnown RBP18.83■□□□□ 0.6
COL9A3-210ENST00000472880 EMP3P54852 163 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 ARF3P61204 181 aaPredicted RBP18.83■□□□□ 0.6
COL9A3-210ENST00000472880 CCZ1BP86790 482 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 CCZ1P86791 482 aaPredicted RBP18.83■□□□□ 0.6
COL9A3-210ENST00000472880 CDC16Q13042 620 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 ZNF169Q14929 603 aaPredicted RBP18.83■□□□□ 0.6
COL9A3-210ENST00000472880 PRTGQ2VWP7 1150 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 B3GNTL1Q67FW5 361 aaPredicted RBP18.83■□□□□ 0.6
COL9A3-210ENST00000472880 ISLR2Q6UXK2 745 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 CENPUQ71F23 418 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 MAMDC2Q7Z304 686 aaPredicted RBP18.83■□□□□ 0.6
COL9A3-210ENST00000472880 CSNK1A1LQ8N752 337 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 PRELID2Q8N945 189 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 ST6GALNAC3Q8NDV1 305 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 ZNF669Q96BR6 464 aaPredicted RBP18.83■□□□□ 0.6
COL9A3-210ENST00000472880 CCDC68Q9H2F9 335 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 ZNF160Q9HCG1 818 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 TAC3Q9UHF0 121 aa18.83■□□□□ 0.6
COL9A3-210ENST00000472880 CTAGE9A4FU28 777 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 MAGEA6P43360 314 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 PNLIPRP1P54315 467 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 Q0VFX4 171 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 MFAP5Q13361 173 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 THOC5Q13769 683 aaKnown RBP18.82■□□□□ 0.6
COL9A3-210ENST00000472880 DSG2Q14126 1118 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 DHX34Q14147 1143 aaKnown RBP18.82■□□□□ 0.6
COL9A3-210ENST00000472880 TLR1Q15399 786 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 ICE2Q659A1 982 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 FBXO42Q6P3S6 717 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 LINC00696Q6ZRV3 163 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 NEK10Q6ZWH5 1172 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 PAQR7Q86WK9 346 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 RERGQ96A58 199 aaPredicted RBP18.82■□□□□ 0.6
COL9A3-210ENST00000472880 C8orf44Q96CB5 159 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 MVB12AQ96EY5 273 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 TRIM56Q9BRZ2 755 aaKnown RBP18.82■□□□□ 0.6
COL9A3-210ENST00000472880 YIPF2Q9BWQ6 316 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 C14orf105Q9NVL8 296 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 TRPC4Q9UBN4 977 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 RUVBL1Q9Y265 456 aaKnown RBP18.82■□□□□ 0.6
COL9A3-210ENST00000472880 HIVEP3Q5T1R4 2406 aa18.82■□□□□ 0.6
COL9A3-210ENST00000472880 DOCK10Q96BY6 2186 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 IGLV3-12A0A075B6K2 115 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 NSG1A0A0A6YYJ2 146 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 FAM237BA0A1B0GVD1 139 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 WIPF3A6NGB9 483 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 SYF2O95926 243 aaKnown RBP18.81■□□□□ 0.6
COL9A3-210ENST00000472880 KRT14P02533 472 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 ANXA5P08758 320 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 EZRP15311 586 aaKnown RBP18.81■□□□□ 0.6
COL9A3-210ENST00000472880 CXCR2P25025 360 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 CLCN7P51798 805 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 VWA2Q5GFL6 755 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 ANKRD22Q5VYY1 191 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 ADCK2Q7Z695 626 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 CAND1Q86VP6 1230 aaKnown RBP18.81■□□□□ 0.6
COL9A3-210ENST00000472880 REXO1L1PQ8IX06 675 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 KBTBD2Q8IY47 623 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 GRHL3Q8TE85 626 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 PKP4Q99569 1192 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 MESP1Q9BRJ9 268 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 XAB2Q9HCS7 855 aaKnown RBP18.81■□□□□ 0.6
COL9A3-210ENST00000472880 ABCF3Q9NUQ8 709 aa18.81■□□□□ 0.6
COL9A3-210ENST00000472880 IGKV1-8A0A0C4DH67 115 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 IDSB3KWA1 339 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 SMAPO00193 183 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 SLC16A8O95907 504 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 UQCRHP07919 91 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 MLNP12872 115 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 EMP2P54851 167 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 PRDX1Q06830 199 aaKnown RBP18.8■□□□□ 0.6
COL9A3-210ENST00000472880 CUL1Q13616 776 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 HKDC1Q2TB90 917 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 GARNL3Q5VVW2 1013 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 ATG9BQ674R7 924 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 ZNF425Q6IV72 752 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 KCNMB4Q86W47 210 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 PPFIBP2Q8ND30 876 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 GIMAP7Q8NHV1 300 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 KCNJ9Q92806 393 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 MMABQ96EY8 250 aaPredicted RBP18.8■□□□□ 0.6
COL9A3-210ENST00000472880 LMF1Q96S06 567 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 SLC30A3Q99726 388 aa18.8■□□□□ 0.6
COL9A3-210ENST00000472880 FBXO6Q9NRD1 293 aaPredicted RBP18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms