RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 HACD4Q5VWC8 232 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 FAM151BQ6UXP7 276 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 BMP8AQ7Z5Y6 402 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 GTPBP3Q969Y2 492 aaKnown RBP13□□□□□ -0.33
COL6A3-209ENST00000472056 GAD1Q99259 594 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 LRCH4O75427 683 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 CPN2P22792 545 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ARFRP1Q13795 201 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 TERB2Q8NHR7 220 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 TTYH3Q9C0H2 523 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 RNF181Q9P0P0 153 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 AURKAO14965 403 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ITM2AO43736 263 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 PAK4O96013 591 aaPredicted RBP13□□□□□ -0.33
COL6A3-209ENST00000472056 SCNN1GP51170 649 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 SLC3A1Q07837 685 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ST3GAL3Q11203 375 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 MAD2L1BPQ15013 274 aaPredicted RBP13□□□□□ -0.33
COL6A3-209ENST00000472056 ATP6AP1Q15904 470 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 EPGNQ6UW88 154 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 SLC30A10Q6XR72 485 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 PLEKHG7Q6ZR37 379 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 CYP4V2Q6ZWL3 525 aaPredicted RBP13□□□□□ -0.33
COL6A3-209ENST00000472056 WDR53Q7Z5U6 358 aaPredicted RBP13□□□□□ -0.33
COL6A3-209ENST00000472056 HSD17B14Q9BPX1 270 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ZSCAN5AQ9BUG6 496 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF700Q9H0M5 742 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 SPON1Q9HCB6 807 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 WASF3Q9UPY6 502 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ABRAXAS2Q15018 415 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13□□□□□ -0.33
COL6A3-209ENST00000472056 VSIG10LQ86VR7 867 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF676Q8N7Q3 588 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 HAS1Q92839 578 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 OR4K3Q96R72 315 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 MRPL17Q9NRX2 175 aaKnown RBP13□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF670-ZNF695F2Z2N8 137 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 K7EPI3 171 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 TFPIP10646 304 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 GAS6Q14393 721 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 CLEC10AQ8IUN9 316 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 GPR135Q8IZ08 494 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF565Q8N9K5 539 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 CHFRQ96EP1 664 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 HERC2P3Q9BVR0 1158 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 CDT1Q9H211 546 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ERVW-1Q9UQF0 538 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 CABIN1Q9Y6J0 2220 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 AGPSO00116 658 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 DLSTP36957 453 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 PSMA6P60900 246 aaKnown RBP12.99□□□□□ -0.33
COL6A3-209ENST00000472056 SF1Q15637 639 aaKnown RBP12.99□□□□□ -0.33
COL6A3-209ENST00000472056 ARHGAP12Q8IWW6 846 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 SPPL2BQ8TCT7 592 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 MSANTD3Q96H12 275 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 C5orf34Q96MH7 638 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 SOBPA7XYQ1 873 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 NUDT7P0C024 238 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 TAS2R40P59535 323 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 PCDH1Q08174 1060 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 EMC10Q5UCC4 262 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 NXPE1Q8N323 547 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 MFSD8Q8NHS3 518 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 GATA5Q9BWX5 397 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-209ENST00000472056 ABI3Q9P2A4 366 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 SRRDQ9UH36 339 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 RGPD8O14715 1765 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-209ENST00000472056 PRAF2O60831 178 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 FCER2P06734 321 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 AQP1P29972 269 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 DUSP4Q13115 394 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 CELF3Q5SZQ8 465 aaKnown RBP12.99□□□□□ -0.33
COL6A3-209ENST00000472056 C9orf57Q5W0N0 161 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 ABHD13Q7L211 337 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 OR52J3Q8NH60 311 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 B3GNT4Q9C0J1 378 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 GPN2Q9H9Y4 310 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-209ENST00000472056 RCCD1A6NED2 376 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 C2orf74A8MZ97 194 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 XPNPEP2O43895 674 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 GTF2F2P13984 249 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 LHCGRP22888 699 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 GRM5P41594 1212 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 CGREF1Q99674 301 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 RPF2Q9H7B2 306 aaKnown RBP12.99□□□□□ -0.33
COL6A3-209ENST00000472056 TESMINQ9Y4I5 508 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 NOBOXO60393 691 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 PRNPP04156 253 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 KCNC3Q14003 757 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF169Q14929 603 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-209ENST00000472056 HMGN3Q15651 99 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 MBOAT1Q6ZNC8 495 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 OR4K2Q8NGD2 314 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 FCRL2Q96LA5 508 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-209ENST00000472056 ENY2Q9NPA8 101 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 STARD7Q9NQZ5 370 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 HCN4Q9Y3Q4 1203 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 MAGP20916 626 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 OR56A1Q8NGH5 318 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 OR6K6Q8NGW6 343 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms