RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 A0A0U1RQV5 110 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 BTBD17A6NE02 478 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 AQP7P3A6NL99 342 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 OR52A4PA6NMU1 304 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 GABRR3A8MPY1 467 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 H3BQV1 296 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 POLR1CO15160 346 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 PAGE4O60829 102 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 CDC123O75794 336 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 SORBS2O94875 1100 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 SYF2O95926 243 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 CLTAP09496 248 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 CALCBP10092 127 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 GJA1P17302 382 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 PRKACAP17612 351 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 TNFRSF1BP20333 461 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 NR1D1P20393 614 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 GPTP24298 496 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 CYP2F1P24903 491 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 ATP5C1P36542 298 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 CDKN1AP38936 164 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 HSPA13P48723 471 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 TUFMP49411 452 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 AIF1P55008 147 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 MOGQ16653 247 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 PRTGQ2VWP7 1150 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 USH1GQ495M9 461 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 MANEAQ5SRI9 462 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 SAPCD1Q5SSQ6 148 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 UBAP2Q5T6F2 1119 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 GRHL2Q6ISB3 625 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 SCARA5Q6ZMJ2 495 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 NLRP9Q7RTR0 991 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 ADAMTSL2Q86TH1 951 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 RTN4RL2Q86UN3 420 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 SLC25A41Q8N5S1 370 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 FSIP1Q8NA03 581 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 UXS1Q8NBZ7 420 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 OR10T2Q8NGX3 314 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 MPLKIPQ8TAP9 179 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 WIPF2Q8TF74 440 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 SLC20A1Q8WUM9 679 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 HMGB4Q8WW32 186 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 ASB5Q8WWX0 329 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 ROBO4Q8WZ75 1007 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 PIGKQ92643 395 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 TNFRSF14Q92956 283 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 ZNF707Q96C28 371 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 KLHL29Q96CT2 875 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 HES6Q96HZ4 224 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 ZNF479Q96JC4 524 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 QRFPRQ96P65 431 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 FCRL5Q96RD9 977 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 PCDHB18PQ96TA0 734 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 ASCL2Q99929 193 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 EGFL8Q99944 293 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 ACBD6Q9BR61 282 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 C11orf70Q9BRQ4 267 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 CINPQ9BW66 212 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 TDRD1Q9BXT4 1180 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 MLXIPLQ9NP71 852 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 PPANQ9NQ55 473 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 FSCN3Q9NQT6 498 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 SENP1Q9P0U3 644 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 KLHL8Q9P2G9 620 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 WNT16Q9UBV4 365 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 CTSFQ9UBX1 484 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 TTC7AQ9ULT0 858 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 SATB2Q9UPW6 733 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 MFHAS1Q9Y4C4 1052 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 HEMK1Q9Y5R4 338 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 RNF215Q9Y6U7 377 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 NCAPD2Q15021 1401 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 EDDM13A0A1B0GTR0 161 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 TMEM120BA0PK00 339 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 SLC22A23A1A5C7 686 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 HELTA6NFD8 242 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 TMEM221A6NGB7 291 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 KIF28PB7ZC32 967 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 TEX22C9J3V5 150 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 MAP2K7O14733 419 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 LSM1O15116 133 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 CHADO15335 359 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 ST8SIA3O43173 380 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 LANCL1O43813 399 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 AVILO75366 819 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 MED24O75448 989 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 PDE9AO76083 593 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 CXCL14O95715 111 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 LDLRP01130 860 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 VIPP01282 170 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 LCATP04180 440 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 TMEM225BP0DP42 221 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 ACHEP22303 614 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 YWHAQP27348 245 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 RBL1P28749 1068 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 HTR7P34969 479 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 RORAP35398 523 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 SYKP43405 635 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms