RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 C10orf82Q8WW14 230 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 CHID1Q9BWS9 393 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 STRADBQ9C0K7 418 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 EFNA1P20827 205 aaPredicted RBP16.82■□□□□ 0.28
PHRF1-202ENST00000413872 FOXN2P32314 431 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 ALKBH2Q6NS38 261 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 KBTBD7Q8WVZ9 684 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 NCSTNQ92542 709 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 NR4A3Q92570 626 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 MS4A4AQ96JQ5 239 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 NKX2-4Q9H2Z4 354 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 MVB12BQ9H7P6 319 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 MS4A12Q9NXJ0 267 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 KHDRBS3O75525 346 aaKnown RBP16.81■□□□□ 0.28
PHRF1-202ENST00000413872 SGIP1Q9BQI5 828 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 SAGE1Q9NXZ1 904 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 FZD4Q9ULV1 537 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 C2orf78A6NCI8 922 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 GSTM3P21266 225 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 NTSR1P30989 418 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 RGS21Q2M5E4 152 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 KLHL22Q53GT1 634 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 TSEN15Q8WW01 171 aaKnown RBP16.81■□□□□ 0.28
PHRF1-202ENST00000413872 GEMIN6Q8WXD5 167 aaKnown RBP16.81■□□□□ 0.28
PHRF1-202ENST00000413872 TOX2Q96NM4 488 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 COL21A1Q96P44 957 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 BHMG1C9JSJ3 638 aaPredicted RBP16.81■□□□□ 0.28
PHRF1-202ENST00000413872 GMFGO60234 142 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 SRP54P61011 504 aaKnown RBP16.81■□□□□ 0.28
PHRF1-202ENST00000413872 ENPP2Q13822 863 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 DECR1Q16698 335 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 SPATS1Q496A3 300 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 WDTC1Q8N5D0 677 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 ACTL8Q9H568 366 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 PLEKHA1Q9HB21 404 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 POMPQ9Y244 141 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 KCNJ13O60928 360 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 CXCR1P25024 350 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 LEPRP48357 1165 aaKnown RBP16.81■□□□□ 0.28
PHRF1-202ENST00000413872 GSCP56915 257 aaPredicted RBP16.81■□□□□ 0.28
PHRF1-202ENST00000413872 EMX2Q04743 252 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 PRRT3Q5FWE3 981 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 GPRIN1Q7Z2K8 1008 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 KBTBD2Q8IY47 623 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 GPR65Q8IYL9 337 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 GLIS1Q8NBF1 620 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 LRRC58Q96CX6 371 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 IFT27Q9BW83 186 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 STRA6Q9BX79 667 aa16.81■□□□□ 0.28
PHRF1-202ENST00000413872 TRIM3O75382 744 aaPredicted RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 CDH1P12830 882 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 C5AR1P21730 350 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 ABATP80404 500 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 QPRTQ15274 297 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 FIBINQ8TAL6 211 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 PIWIL1Q96J94 861 aaKnown RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 HHIPL1Q96JK4 782 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 PAAF1Q9BRP4 392 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 COMMD4Q9H0A8 199 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 POLR2J3Q9H1A7 115 aaKnown RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 SCML1Q9UN30 329 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 SPIN1Q9Y657 262 aaPredicted RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 SCDO00767 359 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 RNGTTO60942 597 aaKnown RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 TSC22D2O75157 780 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 PAK4O96013 591 aaPredicted RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 CD2P06729 351 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 PRKAR1AP10644 381 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 DNASE1L1P49184 302 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 C1orf220Q5T0J3 134 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 DDI2Q5TDH0 399 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 FRRS1Q6ZNA5 592 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 C12orf40Q86WS4 652 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 ZNF570Q96NI8 536 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 CYP8B1Q9UNU6 501 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 CCDC182A6NF36 153 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 LAMTOR5O43504 91 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 NPPAP01160 153 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 NCK1P16333 377 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 ENGP17813 658 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 GJA5P36382 358 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 SNTA1Q13424 505 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 MSS51Q4VC12 460 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 LIPJQ5W064 366 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 HEATR4Q86WZ0 1026 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 GTPBP3Q969Y2 492 aaKnown RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 KIAA1143Q96AT1 154 aaPredicted RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 TRNT1Q96Q11 434 aaKnown RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 COQ7Q99807 217 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 EBF4Q9BQW3 602 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 SPATA9Q9BWV2 254 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 A0A1W2PP55 124 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 FAM72CH0Y354 149 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 KLF1Q13351 362 aaPredicted RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 UAP1L1Q3KQV9 507 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 PDSS1Q5T2R2 415 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 FAM72AQ5TYM5 149 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 MLIPQ5VWP3 458 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 FAM72DQ6L9T8 149 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms