RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 INTS12Q96CB8 462 aaKnown RBP-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 ZNF317Q96PQ6 595 aaPredicted RBP-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 USP28Q96RU2 1077 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 RAB40CQ96S21 281 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 SLC22A12Q96S37 553 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 PCDHB18PQ96TA0 734 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 AMELYQ99218 206 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 ATF6BQ99941 703 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 PAAF1Q9BRP4 392 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 CHAC1Q9BUX1 264 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 CARD6Q9BX69 1037 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 NAA15Q9BXJ9 866 aaKnown RBP-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 CLEC7AQ9BXN2 247 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 NUSAP1Q9BXS6 441 aaKnown RBP-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 NMNAT2Q9BZQ4 307 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 SLC13A1Q9BZW2 595 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 NPFFR1Q9GZQ6 430 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 C11orf54Q9H0W9 315 aaPredicted RBP-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 SLC26A1Q9H2B4 701 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 SLC32A1Q9H598 525 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 XPO5Q9HAV4 1204 aaKnown RBP eCLIP-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 NOX3Q9HBY0 568 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 NGBQ9NPG2 151 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 KLHL1Q9NR64 748 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 CHST12Q9NRB3 414 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 ZDHHC7Q9NXF8 308 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 SLC5A4Q9NY91 659 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 JKAMPQ9P055 326 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 PDP1Q9P0J1 537 aaPredicted RBP-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 DOK5Q9P104 306 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 NOCTQ9UK39 431 aaKnown RBP-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 EPB41L3Q9Y2J2 1087 aaPredicted RBP-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 CDY1Q9Y6F8 540 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 CDC42BPGQ6DT37 1551 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 STK36Q9NRP7 1315 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 NHSL1Q5SYE7 1610 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 MYH15Q9Y2K3 1946 aa-1.74□□□□□ -2.69
RNU4-88P-201ENST00000411220 MPDZO75970 2070 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 BICRAQ9NZM4 1560 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 A0A0G2JPF8 293 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 TEX13DA0A0J9YY54 714 aaPredicted RBP-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 FRG2CA6NGY1 282 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 TSPY2A6NKD2 308 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 KIF28PB7ZC32 967 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 HNRNPCL3B7ZW38 293 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 E7EWF7 191 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 H7C417 338 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 CLIC2O15247 247 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 SGCEO43556 437 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 SCO2O43819 266 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 FCMRO60667 390 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 HNRNPCL1O60812 293 aaKnown RBP-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 NBNO60934 754 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 ZNF253O75346 499 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 NXPH2O95156 264 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 KRT75O95678 551 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 IGLV2-23P01705 113 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 RAF1P04049 648 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 RFPL3SP0C7P2 107 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 TSPY3P0CV98 308 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 TSPY4P0CV99 314 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 TSPY8P0CW00 308 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 TSPY10P0CW01 314 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 HNRNPCL4P0DMR1 293 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 ERGP11308 486 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 VPREB1P12018 145 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 ADRB3P13945 408 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 IDEP14735 1019 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 CD27P26842 260 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 OTX2P32243 289 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 ACSL1P33121 698 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 TRIM23P36406 574 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 APOBEC1P41238 236 aaKnown RBP-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 ELK3P41970 407 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 LIFRP42702 1097 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 ALDH3B2P48448 385 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 AKR1C2P52895 323 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 GUCY2DQ02846 1103 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 AKR1C1Q04828 323 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 C2orf54Q08AI8 447 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 ZNF543Q08ER8 600 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 ZNF155Q12901 538 aaPredicted RBP-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 ITPK1Q13572 414 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 GIT2Q14161 759 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 DCTN1Q14203 1278 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 GRB14Q14449 540 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 SART3Q15020 963 aaKnown RBP-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 PDK1Q15118 436 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 E2F5Q15329 346 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 GSG1Q2KHT4 349 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 MUM1Q2TAK8 710 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 HLA-BQ31612 363 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 USP41Q3LFD5 358 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 PARP10Q53GL7 1025 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 IGSF11Q5DX21 431 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 ZNF569Q5MCW4 686 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 C1orf220Q5T0J3 134 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 RNF187Q5TA31 235 aaPredicted RBP-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 NANOGP8Q6NSW7 305 aa-1.75□□□□□ -2.69
RNU4-88P-201ENST00000411220 PPP4R4Q6NUP7 873 aa-1.75□□□□□ -2.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms