RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 LSP1P33241 339 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 CCR8P51685 355 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 PPP1CAP62136 330 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 DOC2AQ14183 400 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 SLCO4C1Q6ZQN7 724 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 PLXDC1Q8IUK5 500 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 AFAP1L2Q8N4X5 818 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 ZNF781Q8N8C0 355 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 ZDHHC12Q96GR4 267 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 C7orf26Q96N11 449 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 PRAP1Q96NZ9 151 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 TGM7Q96PF1 710 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 CDC6Q99741 560 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 DPH7Q9BTV6 452 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 PELI2Q9HAT8 420 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 POMT2Q9UKY4 750 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 SNX7Q9UNH6 387 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 KLHL20Q9Y2M5 609 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 VPS13AQ96RL7 3174 aa17.39■□□□□ 0.38
SDC1-203ENST00000403076 A0A0J9YY10 115 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 A0A1B0GTL3 188 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 HGFP14210 728 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 HRH2P25021 359 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 CD1CP29017 333 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 HMOX2P30519 316 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 RPL14P50914 215 aaKnown RBP17.39■□□□□ 0.37
SDC1-203ENST00000403076 ERVPABLB-1P60509 514 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 CCL7P80098 99 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 HIST2H2ACQ16777 129 aaPredicted RBP17.39■□□□□ 0.37
SDC1-203ENST00000403076 PAGE2BQ5JRK9 111 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 KIAA1614Q5VZ46 1190 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 LIPJQ5W064 366 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 ATG9BQ674R7 924 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 HIST2H2AA3Q6FI13 130 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 LETMD1Q6P1Q0 360 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 ATG14Q6ZNE5 492 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 FAM92BQ6ZTR7 304 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 LRRC34Q8IZ02 419 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 CDYL2Q8N8U2 506 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 FLVCR1-AS1Q8TAF5 88 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 METTL6Q8TCB7 284 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 PTCD3Q96EY7 689 aaKnown RBP17.39■□□□□ 0.37
SDC1-203ENST00000403076 CHMP6Q96FZ7 201 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 MAGEB10Q96LZ2 347 aaPredicted RBP17.39■□□□□ 0.37
SDC1-203ENST00000403076 EFCAB11Q9BUY7 163 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 LRRN3Q9H3W5 708 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 TMEM184CQ9NVA4 438 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 EPHA6Q9UF33 1036 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 KLHL3Q9UH77 587 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 ZDHHC2Q9UIJ5 367 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 TRAF6Q9Y4K3 522 aa17.39■□□□□ 0.37
SDC1-203ENST00000403076 AZIN1O14977 448 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 UGDHO60701 494 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 PRAMEF4O60810 478 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 EDF1O60869 148 aaKnown RBP17.38■□□□□ 0.37
SDC1-203ENST00000403076 KITP10721 976 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 ACP1P24666 158 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 CXCR2P25025 360 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 HNF4AP41235 474 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 GFERP55789 205 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 MEF2AQ02078 507 aaPredicted RBP17.38■□□□□ 0.37
SDC1-203ENST00000403076 LAPTM5Q13571 262 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 SLBPQ14493 270 aaKnown RBP eCLIP17.38■□□□□ 0.37
SDC1-203ENST00000403076 TBCCQ15814 346 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 CPSF6Q16630 551 aaKnown RBP eCLIP17.38■□□□□ 0.37
SDC1-203ENST00000403076 CCDC157Q569K6 752 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 PRAMEF9Q5VWM5 478 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 KIRREL3Q8IZU9 778 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 CLYBLQ8N0X4 340 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 KRT78Q8N1N4 520 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 L3MBTL4Q8NA19 623 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 GRAMD1AQ96CP6 724 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 PPM1MQ96MI6 270 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 KCNA7Q96RP8 456 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 AIF1LQ9BQI0 150 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 TWSG1Q9GZX9 223 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 RAB33BQ9H082 229 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 KLHL25Q9H0H3 589 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 EHD1Q9H4M9 534 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 SLC6A20Q9NP91 592 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 FGFR1OP2Q9NVK5 253 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 PNPOQ9NVS9 261 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 MARCOQ9UEW3 520 aaPredicted RBP17.38■□□□□ 0.37
SDC1-203ENST00000403076 TRPS1Q9UHF7 1281 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 ZNF225Q9UK10 706 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 ZFHX2Q9C0A1 2572 aaPredicted RBP17.38■□□□□ 0.37
SDC1-203ENST00000403076 ASXL3Q9C0F0 2248 aa17.38■□□□□ 0.37
SDC1-203ENST00000403076 RP1P56715 2156 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 FFAR3O14843 346 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 HGSO14964 777 aaPredicted RBP17.37■□□□□ 0.37
SDC1-203ENST00000403076 GPR42O15529 346 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 TNFSF14O43557 240 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 RASSF9O75901 435 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 WFS1O76024 890 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 ENO1P06733 434 aaKnown RBP17.37■□□□□ 0.37
SDC1-203ENST00000403076 CAPN1P07384 714 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 JUPP14923 745 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 PVRP15151 417 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 MAGP20916 626 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 GRK3P35626 688 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms