RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CLIC1O00299 241 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 EPB42P16452 691 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 DMPKQ09013 629 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 NPRL3Q12980 569 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 FAM180BQ6P0A1 224 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 GDPD3Q7L5L3 318 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 AKAP14Q86UN6 197 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 PTOV1Q86YD1 416 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 GATAD2AQ86YP4 633 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 ZNF566Q969W8 418 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 RNF38Q9H0F5 515 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 GFRA2O00451 464 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 CTDSP2O14595 271 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 RFPL2O75678 378 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 PTHP01270 115 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 CAMK2GQ13555 558 aaPredicted RBP20.36■□□□□ 0.85
CTCF-202ENST00000401394 CHRNA6Q15825 494 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 FAM214AQ32MH5 1076 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 UAP1L1Q3KQV9 507 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 RTP2Q5QGT7 225 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 NXNL2Q5VZ03 156 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 ATG9BQ674R7 924 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 VRK3Q8IV63 474 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 TMEM132CQ8N3T6 1108 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 CARNMT1Q8N4J0 409 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 AADATQ8N5Z0 425 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 MTERF1Q99551 399 aaKnown RBP20.36■□□□□ 0.85
CTCF-202ENST00000401394 MAGEH1Q9H213 219 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 ARL15Q9NXU5 204 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 FABP3P05413 133 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 CORO1AP31146 461 aaKnown RBP20.35■□□□□ 0.85
CTCF-202ENST00000401394 RACK1P63244 317 aaKnown RBP20.35■□□□□ 0.85
CTCF-202ENST00000401394 HSPA14Q0VDF9 509 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 TIGD6Q17RP2 521 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 KIAA1614Q5VZ46 1190 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 CCBE1Q6UXH8 406 aaPredicted RBP20.35■□□□□ 0.85
CTCF-202ENST00000401394 DMRTB1Q96MA1 342 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 RMND5AQ9H871 391 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 RFXAPO00287 272 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 CLCN4P51793 760 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 TPRG1LQ5T0D9 272 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 NEK5Q6P3R8 708 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 TRIM46Q7Z4K8 759 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 PDLIM5Q96HC4 596 aaKnown RBP20.35■□□□□ 0.85
CTCF-202ENST00000401394 ADGRE3Q9BY15 652 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 HOXD1Q9GZZ0 328 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 KCNH6Q9H252 994 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 PCDH10Q9P2E7 1040 aa20.35■□□□□ 0.85
CTCF-202ENST00000401394 GOLGA4Q13439 2230 aaKnown RBP20.35■□□□□ 0.85
CTCF-202ENST00000401394 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.34■□□□□ 0.85
CTCF-202ENST00000401394 GRXCR2A6NFK2 248 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 AGAP5A6NIR3 686 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 METTL15A6NJ78 407 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 STK16O75716 305 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 RRM2P31350 389 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 KDELR2P33947 212 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 MAGEA2P43356 314 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 CACNG1Q06432 222 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 ZNF177Q13360 481 aaPredicted RBP20.34■□□□□ 0.85
CTCF-202ENST00000401394 CXorf57Q6NSI4 855 aaKnown RBP20.34■□□□□ 0.85
CTCF-202ENST00000401394 NANOGNBQ7Z5D8 188 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 LINC01599Q8WXQ3 324 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 RIMKLBQ9ULI2 386 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 SLC22A14Q9Y267 594 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 OARD1Q9Y530 152 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 MICAL3Q7RTP6 2002 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 J3KTA2 159 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 FPGTO14772 594 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 ALOX5P09917 674 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 NFE2Q16621 373 aaPredicted RBP20.34■□□□□ 0.85
CTCF-202ENST00000401394 GLB1LQ6UWU2 654 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 TSEN54Q7Z6J9 526 aaKnown RBP20.34■□□□□ 0.85
CTCF-202ENST00000401394 ZZZ3Q8IYH5 903 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 SETD9Q8NE22 299 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 UTP15Q8TED0 518 aaKnown RBP20.34■□□□□ 0.85
CTCF-202ENST00000401394 GTF3C2Q8WUA4 911 aaPredicted RBP20.34■□□□□ 0.85
CTCF-202ENST00000401394 NEDD4LQ96PU5 975 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 CTRCQ99895 268 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 C2orf78A6NCI8 922 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 SLC28A1O00337 649 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 GBAP04062 536 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 ASGR1P07306 291 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 HOXB9P17482 250 aaPredicted RBP20.34■□□□□ 0.85
CTCF-202ENST00000401394 GJA8P48165 433 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 RHOAP61586 193 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 ANGPTL8Q6UXH0 198 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 ANKS3Q6ZW76 656 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 SH3KBP1Q96B97 665 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 OR5M11Q96RB7 305 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 FEVQ99581 238 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 SH3GL1Q99961 368 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 APOL4Q9BPW4 351 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 ITPAQ9BY32 194 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 ELOVL6Q9H5J4 265 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 TMED5Q9Y3A6 229 aa20.34■□□□□ 0.85
CTCF-202ENST00000401394 NINQ8N4C6 2090 aa20.33■□□□□ 0.85
CTCF-202ENST00000401394 COCHO43405 550 aa20.33■□□□□ 0.85
CTCF-202ENST00000401394 LAMP1P11279 417 aa20.33■□□□□ 0.85
CTCF-202ENST00000401394 DNAJA1P31689 397 aaKnown RBP20.33■□□□□ 0.85
CTCF-202ENST00000401394 IRF3Q14653 427 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms