RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 DEFB110Q30KQ9 67 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 C4orf17Q53FE4 359 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 MROH9Q5TGP6 573 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 ZC3HC1Q86WB0 502 aaKnown RBP9.96□□□□□ -0.82
NEDD8-202ENST00000396828 SERPINA9Q86WD7 417 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 CYP4X1Q8N118 509 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 CARFQ8N187 725 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 LMNTD1Q8N9Z9 388 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 GALNT11Q8NCW6 608 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 OR8K5Q8NH50 307 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 FLVCR1-AS1Q8TAF5 88 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 C19orf60Q96EN9 201 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 VPS39Q96JC1 886 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 SMC6Q96SB8 1091 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 CCM2Q9BSQ5 444 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 HGH1Q9BTY7 390 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 SPRTNQ9H040 489 aaPredicted RBP9.96□□□□□ -0.82
NEDD8-202ENST00000396828 CCDC68Q9H2F9 335 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 TFB2MQ9H5Q4 396 aaKnown RBP9.96□□□□□ -0.82
NEDD8-202ENST00000396828 ACTR5Q9H9F9 607 aaPredicted RBP9.96□□□□□ -0.82
NEDD8-202ENST00000396828 FBXO6Q9NRD1 293 aaPredicted RBP9.96□□□□□ -0.82
NEDD8-202ENST00000396828 SPHK1Q9NYA1 384 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 ZDHHC3Q9NYG2 299 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 MARCH4Q9P2E8 410 aaPredicted RBP9.96□□□□□ -0.82
NEDD8-202ENST00000396828 VPS4AQ9UN37 437 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 ICKQ9UPZ9 632 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 COMMD10Q9Y6G5 202 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 TRIM49D1C9J1S8 452 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 F8W8V4 182 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 CNOT3O75175 753 aaKnown RBP9.95□□□□□ -0.82
NEDD8-202ENST00000396828 MSL3P1P0C860 447 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 RALBP11234 206 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 ACRV1P26436 265 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 NDUFS1P28331 727 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 GABRA4P48169 554 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 SERPINB8P50452 374 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 MAGOHP61326 146 aaKnown RBP9.95□□□□□ -0.82
NEDD8-202ENST00000396828 BMPR2Q13873 1038 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 BOP1Q14137 746 aaKnown RBP9.95□□□□□ -0.82
NEDD8-202ENST00000396828 SEMA3AQ14563 771 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 NCF4Q15080 339 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 INPP5JQ15735 1006 aaPredicted RBP9.95□□□□□ -0.82
NEDD8-202ENST00000396828 DBN1Q16643 649 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 TTMPQ5BVD1 217 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 C1orf189Q5VU69 101 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 SLC6A19Q695T7 634 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 TIFABQ6ZNK6 161 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 LDB1Q86U70 411 aaPredicted RBP9.95□□□□□ -0.82
NEDD8-202ENST00000396828 TRABD2AQ86V40 505 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 AMIGO1Q86WK6 493 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 FAM20CQ8IXL6 584 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 SRRM1Q8IYB3 904 aaKnown RBP9.95□□□□□ -0.82
NEDD8-202ENST00000396828 EFCAB3Q8N7B9 438 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 GPATCH11Q8N954 259 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 OR5AR1Q8NGP9 310 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 HEXDCQ8WVB3 486 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 TFGQ92734 400 aaPredicted RBP9.95□□□□□ -0.82
NEDD8-202ENST00000396828 ARL8AQ96BM9 186 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 ALKBH8Q96BT7 664 aaKnown RBP9.95□□□□□ -0.82
NEDD8-202ENST00000396828 TSPAN17Q96FV3 270 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 MCMBPQ9BTE3 642 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 ACTR10Q9NZ32 417 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 PLEKHB1Q9UF11 243 aaPredicted RBP9.95□□□□□ -0.82
NEDD8-202ENST00000396828 PLAGL1Q9UM63 463 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 CRYL1Q9Y2S2 319 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 ACTL7BQ9Y614 415 aa9.95□□□□□ -0.82
NEDD8-202ENST00000396828 MYO9AB2RTY4 2548 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 FAM95CA0A1B0GW59 222 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 A1L4Q6 167 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 KLHL33A6NCF5 533 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 CFAP99D6REC4 459 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 E7EQ34 232 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 AGFG2O95081 481 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 ESR1P03372 595 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 UGT2B7P16662 529 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 STMN1P16949 149 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 KRT4P19013 534 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 CYP2A7P20853 494 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 SAT1P21673 171 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 COL8A1P27658 744 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 ACADLP28330 430 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 GABRB3P28472 473 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 TYK2P29597 1187 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 PEBP1P30086 187 aaKnown RBP9.94□□□□□ -0.82
NEDD8-202ENST00000396828 OTX2P32243 289 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 NSG1P42857 185 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 ADARP55265 1226 aaKnown RBP9.94□□□□□ -0.82
NEDD8-202ENST00000396828 POU4F1Q01851 419 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 ITIH4Q14624 930 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 USP10Q14694 798 aaKnown RBP9.94□□□□□ -0.82
NEDD8-202ENST00000396828 SLC9A5Q14940 896 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 PLEKHN1Q494U1 663 aaPredicted RBP9.94□□□□□ -0.82
NEDD8-202ENST00000396828 TNFAIP8L3Q5GJ75 292 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 FHL5Q5TD97 284 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 FAM45BPQ6NSW5 357 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 CNSTQ6PJW8 725 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 SPESP1Q6UW49 350 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 RAPH1Q70E73 1250 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 CCDC91Q7Z6B0 441 aa9.94□□□□□ -0.82
NEDD8-202ENST00000396828 FAM45AQ8TCE6 357 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms