RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SERPINA9Q86WD7 417 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 RELTQ969Z4 430 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 TIFAQ96CG3 184 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 ZNF486Q96H40 463 aaPredicted RBP11.57□□□□□ -0.56
SYNPO-202ENST00000394243 TM9SF2Q99805 663 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 TMEM184CQ9NVA4 438 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 NUDT7P0C024 238 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 GNAZP19086 355 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ASTE1Q2TB18 679 aaPredicted RBP11.56□□□□□ -0.56
SYNPO-202ENST00000394243 NBPF12Q5TAG4 269 aaPredicted RBP11.56□□□□□ -0.56
SYNPO-202ENST00000394243 EEF1DP3Q658K8 133 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ADAD1Q96M93 576 aaKnown RBP11.56□□□□□ -0.56
SYNPO-202ENST00000394243 SPATA9Q9BWV2 254 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ZNF696Q9H7X3 374 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ZNF225Q9UK10 706 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 CDH7Q9ULB5 785 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 C14orf166Q9Y224 244 aaKnown RBP11.56□□□□□ -0.56
SYNPO-202ENST00000394243 SNX10Q9Y5X0 201 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 C1orf196B1AJZ1 125 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 OR1F1O43749 312 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 RENP00797 406 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 H2AFB2P0C5Z0 115 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ZNF20P17024 532 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 NRLP54845 237 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 CHAF1BQ13112 559 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 COL28A1Q2UY09 1125 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 UBQLNLQ8IYU4 475 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 RPLP0P6Q8NHW5 317 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ERVK-18Q9QC07 812 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 NOCTQ9UK39 431 aaKnown RBP11.56□□□□□ -0.56
SYNPO-202ENST00000394243 OR2AG2A6NM03 316 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 MATN3O15232 486 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 IFNA2P01563 188 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 DLDP09622 509 aaKnown RBP11.56□□□□□ -0.56
SYNPO-202ENST00000394243 MAGEA11P43364 429 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 FCGRTP55899 365 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 TLE2Q04725 743 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 DPY19L1Q2PZI1 675 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ARSKQ6UWY0 536 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ZNF101Q8IZC7 436 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ZUFSPQ96AP4 578 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 TFB2MQ9H5Q4 396 aaKnown RBP11.56□□□□□ -0.56
SYNPO-202ENST00000394243 OR2S2Q9NQN1 319 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 SLIT1O75093 1534 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 CPS1P31327 1500 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 AGAP5A6NIR3 686 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 A8MT66 165 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 H0YAE9 185 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 FXYD6P3P58550 94 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 C9orf57Q5W0N0 161 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ALG1LQ6GMV1 187 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ZNF767PQ75MW2 155 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 OR5AK3PQ8NH89 298 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ADAMTS10Q9H324 1103 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 SRRDQ9UH36 339 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 A0A1W2PRB8 838 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 CILPO75339 1184 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 PCSK2P16519 638 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 S100PP25815 95 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 NR4A2P43354 598 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 CRISP3P54108 245 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 RIPPLY1Q0D2K3 151 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 FADDQ13158 208 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 MAD2L1BPQ15013 274 aaPredicted RBP11.56□□□□□ -0.56
SYNPO-202ENST00000394243 CES5AQ6NT32 575 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ANKRD54Q6NXT1 300 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 CRTC1Q6UUV9 634 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 JAGN1Q8N5M9 183 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 PCSK9Q8NBP7 692 aaKnown RBP11.56□□□□□ -0.56
SYNPO-202ENST00000394243 FAM46DQ8NEK8 389 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 TCTEX1D2Q8WW35 142 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 CNTN3Q9P232 1028 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ENPP3O14638 875 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ECI2O75521 394 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 C6orf141Q5SZD1 244 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 OR4F3Q6IEY1 312 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 LPPQ93052 612 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ZBED6CLQ96FA7 236 aaPredicted RBP11.56□□□□□ -0.56
SYNPO-202ENST00000394243 YIPF4Q9BSR8 244 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 CD84Q9UIB8 345 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 SCP2D1Q9UJQ7 156 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 ABCA9Q8IUA7 1624 aa11.56□□□□□ -0.56
SYNPO-202ENST00000394243 A0A1W2PP18 115 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 TRBC2A0A5B9 178 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 C1QTNF3-AMACRE9PGA6 284 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 FECHP22830 423 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 ADCYAP1R1P41586 468 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 ST3GAL4Q11206 333 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 SPIN3Q5JUX0 258 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 LIPKQ5VXJ0 399 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 LHFPL3Q86UP9 236 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 LRRC52Q8N7C0 313 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 YIPF7Q8N8F6 280 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 CAMK1GQ96NX5 476 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 UBIAD1Q9Y5Z9 338 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 TEX13DA0A0J9YY54 714 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-202ENST00000394243 H0YGN5 161 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 CKMT1AP12532 417 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 PTPRAP18433 802 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 CDH11P55287 796 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms