RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CLDN9O95484 217 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 MMP2P08253 660 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 C8orf89P0DMQ9 161 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 ITGAXP20702 1163 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 OLR1P78380 273 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 MRPS22P82650 360 aaKnown RBP9.99□□□□□ -0.81
COL6A3-205ENST00000392004 SLC13A2Q13183 592 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 ACAP2Q15057 778 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 TIGD2Q4W5G0 525 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 TMEM198Q66K66 360 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 LKAAEAR1Q8TD35 194 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 ZNF419Q96HQ0 510 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-205ENST00000392004 RSPH9Q9H1X1 276 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-205ENST00000392004 MARK1Q9P0L2 795 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 ATXN7L1Q9ULK2 861 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-205ENST00000392004 THSD7BQ9C0I4 1608 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 EVPLLA8MZ36 301 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 AP1G1O43747 822 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 TFAP2AP05549 437 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 THRAP10827 490 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ESRRGP62508 458 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 PEX6Q13608 980 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 CYP51A1Q16850 503 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 HSF5Q4G112 596 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 OGFRL1Q5TC84 451 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ALKBH2Q6NS38 261 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 SH2D5Q6ZV89 423 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 CHSY3Q70JA7 882 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ZNF655Q8N720 491 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ZFP28Q8NHY6 868 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 THAP3Q8WTV1 239 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 KCNJ9Q92806 393 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 VMP1Q96GC9 406 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 MKS1Q9NXB0 559 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ENTPD4Q9Y227 616 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 RNF11Q9Y3C5 154 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 NOTCH2Q04721 2471 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 SHISA7A6NL88 538 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 CASQ2O14958 399 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ADAM23O75077 832 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 SERPINI2O75830 405 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 MLYCDO95822 493 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 IDH3AP50213 366 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ANGPT1Q15389 498 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 DEFB134Q4QY38 66 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 TMEM164Q5U3C3 297 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 BNC2Q6ZN30 1099 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ZNF534Q76KX8 674 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 EFL1Q7Z2Z2 1120 aaKnown RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 THOC6Q86W42 341 aaKnown RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 TMEM132CQ8N3T6 1108 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 FBXL6Q8N531 539 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ADCY4Q8NFM4 1077 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 GPR22Q99680 433 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 FANCEQ9HB96 536 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 TAAR2Q9P1P5 351 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 DHRS7Q9Y394 339 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 PTGDR2Q9Y5Y4 395 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 OAS3Q9Y6K5 1087 aaKnown RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 UNC80Q8N2C7 3258 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 A8MT66 165 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 GFRA2O00451 464 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 DLL1O00548 723 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ITM2AO43736 263 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 SORBS2O94875 1100 aaKnown RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 PIM1P11309 404 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 MYCLP1P12525 358 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 IL1RNP18510 177 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 AQP1P29972 269 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 TLX1P31314 330 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 PGM2L1Q6PCE3 622 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 AMIGO1Q86WK6 493 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 TMEM126BQ8IUX1 230 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 CROCCP3Q8IVE0 287 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 DCUN1D3Q8IWE4 304 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 KIAA2013Q8IYS2 634 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 PIAS4Q8N2W9 510 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 PJA1Q8NG27 643 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 OR9A1PQ8NGU1 263 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 DNAJB14Q8TBM8 379 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 SLC13A3Q8WWT9 602 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 SMPDL3AQ92484 453 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 LPGAT1Q92604 370 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 SLC30A3Q99726 388 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 C17orf62Q9BQA9 187 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 GPN3Q9UHW5 284 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 SH3GLB1Q9Y371 365 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 DGKBQ9Y6T7 804 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 C5orf42Q9H799 3197 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 DNAJA2O60884 412 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 C8GP07360 202 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 SMIM18P0DKX4 95 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 S100A3P33764 101 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 PTGER1P34995 402 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ZNF140P52738 457 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 HK3P52790 923 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 FASTKQ14296 549 aaKnown RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 SYT13Q7L8C5 426 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 SNX32Q86XE0 403 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ACMSDQ8TDX5 336 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms