RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PTTG2Q9NZH5 202 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 PCDHGB6Q9Y5F9 930 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 HCKP08631 526 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 EFNA1P20827 205 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 MAPK3P27361 379 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 PTGS2P35354 604 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 DGKZQ13574 1117 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 HERC3Q15034 1050 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 CLEC12AQ5QGZ9 265 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 TMIEQ8NEW7 156 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 ARNTL2Q8WYA1 636 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 KLHL6Q8WZ60 621 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 TRMT61BQ9BVS5 477 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 IFT52Q9Y366 437 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 C9JVG2 144 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 E7EQ34 232 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 ZNF41P51814 821 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 RAB15P59190 212 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 DECR1Q16698 335 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 TMCO2Q7Z6W1 182 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 THRSPQ92748 146 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 SHDQ96IW2 340 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 SEC61A2Q9H9S3 476 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 CERS4Q9HA82 394 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 USP29Q9HBJ7 922 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 PLCL2Q9UPR0 1127 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 MROH2AA6NES4 1674 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 AGPSO00116 658 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 H1F0P07305 194 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 LRRTM4Q86VH4 590 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 KLK6Q92876 244 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 C2CD4BA6NLJ0 364 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 DISC1C4P0D8 188 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 CCL22O00626 93 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 BMP8BP34820 402 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 BMP8AQ7Z5Y6 402 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 CD99L2Q8TCZ2 262 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 NINJ1Q92982 152 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 DMRTB1Q96MA1 342 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 HBEGFQ99075 208 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 DKKL1Q9UK85 242 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 HTR3EA5X5Y0 456 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 IMPDH1P20839 514 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 AQP4P55087 323 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 PDCD4Q53EL6 469 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 GPAT4Q86UL3 456 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 TIGD4Q8IY51 512 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 FUBP3Q96I24 572 aaKnown RBP eCLIP12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 KCNIP3Q9Y2W7 256 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 SNX10Q9Y5X0 201 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 MYO5BQ9ULV0 1848 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 EEFSECP57772 596 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 CDK10Q15131 360 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 GKN2Q86XP6 184 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 TMEM109Q9BVC6 243 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 UTS2RQ9UKP6 389 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 ABCG2Q9UNQ0 655 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 CD48P09326 243 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 ADH5P11766 374 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 RIN1Q13671 783 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 ANKRD22Q5VYY1 191 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 KCTD13Q8WZ19 329 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 ACDQ96AP0 544 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 SLC32A1Q9H598 525 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 SUV39H2Q9H5I1 410 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 ZCCHC3Q9NUD5 404 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 KLK3P07288 261 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 DUOXA1Q1HG43 343 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 EOGTQ5NDL2 527 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 SLC7A6OSQ96CW6 309 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 LRRC46Q96FV0 321 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 NELFAQ9H3P2 528 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 NUDT15Q9NV35 164 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 SPEF1Q9Y4P9 236 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 ZNF8P17098 575 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 ENGP17813 658 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 GLP1RP43220 463 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 M0R129 80 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 TRAPPC6AO75865 159 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 APOL3O95236 402 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 IL33O95760 270 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 HERV-K104P61576 105 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 TUBA3CQ13748 450 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 RAB12Q6IQ22 244 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 BRAT1Q6PJG6 821 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 JAGN1Q8N5M9 183 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 ZNF709Q8N972 641 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 TMEM125Q96AQ2 219 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 COL21A1Q96P44 957 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 Q9N2J8 555 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 TREM1Q9NP99 234 aa12.48□□□□□ -0.41
CCDC88C-204ENST00000389857 EDDM13A0A1B0GTR0 161 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 A8MUA0 341 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 SCAMP1O15126 338 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 GP1BBP13224 206 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 ACTR1BP42025 376 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 DGKEP52429 567 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 ACTR1AP61163 376 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 CMTR2Q8IYT2 770 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 THEM6Q8WUY1 208 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms