RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 OR1E3Q8WZA6 343 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 UBE2E3Q969T4 207 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 BIRC7Q96CA5 298 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 FRG2BQ96QU4 278 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 EFHD1Q9BUP0 239 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 FAM192AQ9GZU8 254 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 CD300AQ9UGN4 299 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 EIF3LQ9Y262 564 aaKnown RBP17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 PCDHGA11Q9Y5H2 935 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 A0A1W2PPC4 97 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 DPPA5A6NC42 116 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 PRR19A6NJB7 356 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 E7ENX8 843 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 FFAR3O14843 346 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 GPR42O15529 346 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 TNFP01375 233 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 LYNP07948 512 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 HSD3B1P14060 373 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 HSD3B2P26439 372 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 RPL10P27635 214 aaKnown RBP17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 MAPK1P28482 360 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 MS4A2Q01362 244 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 TAP2Q03519 686 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 CSTF3Q12996 717 aaKnown RBP17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 ABRAXAS2Q15018 415 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 ZXDCQ2QGD7 858 aaPredicted RBP17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 TMEM31Q5JXX7 168 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 C6orf136Q5SQH8 315 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 LCTLQ6UWM7 567 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 SLC36A4Q6YBV0 504 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 MINDY1Q8N5J2 469 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 SMPDL3AQ92484 453 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 TRIM15Q9C019 465 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 PRDM6Q9NQX0 595 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 AIG1Q9NVV5 245 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 DLGAP2Q9P1A6 1054 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 RIMS3Q9UJD0 308 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 RAB26Q9ULW5 256 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 SIT1Q9Y3P8 196 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 PTGDR2Q9Y5Y4 395 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 DGKBQ9Y6T7 804 aa17.6■□□□□ 0.41
CCDC88C-203ENST00000389856 KCNE1BA0A087WTH5 132 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 DYTNA2CJ06 578 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 H0YIV9 168 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 DENRO43583 198 aaKnown RBP17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 RASGRP1O95267 797 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 FUCA1P04066 466 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 ALDOCP09972 364 aaKnown RBP17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 ERGP11308 486 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 HTR6P50406 440 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 ERFP50548 548 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 BLKP51451 505 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 PHEXP78562 749 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 MRPS22P82650 360 aaKnown RBP17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 RHDQ02161 417 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 ILF3Q12906 894 aaKnown RBP eCLIP17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 TSTA3Q13630 321 aaPredicted RBP17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 GRB7Q14451 532 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 CYP2A13Q16696 494 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 GRAMD1BQ3KR37 738 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 PDCD4Q53EL6 469 aaKnown RBP17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 SFT2D3Q587I9 215 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 PRAMEF14Q5SWL7 426 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 CACHD1Q5VU97 1274 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 PRAMEF13Q5VWM6 474 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 LPCAT4Q643R3 524 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 SNX19Q92543 992 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 ZUFSPQ96AP4 578 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 INSM2Q96T92 566 aaPredicted RBP17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 MUC13Q9H3R2 512 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 IMP3Q9NV31 184 aaKnown RBP17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 ZIM2Q9NZV7 527 aa17.59■□□□□ 0.41
CCDC88C-203ENST00000389856 E7EQ34 232 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 LSM1O15116 133 aaKnown RBP17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 ANGPT2O15123 496 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 RSL1D1O76021 490 aaKnown RBP17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 CXCR2P25025 360 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 CXCL12P48061 93 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 BNIP2Q12982 314 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 DOC2AQ14183 400 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 AP5B1Q2VPB7 878 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 SGO1Q5FBB7 561 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 ATG9BQ674R7 924 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 OR52E8Q6IFG1 317 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 SCIMPQ6UWF3 145 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 ABRAXAS1Q6UWZ7 409 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 Q6ZSR9 355 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 SPATA24Q86W54 205 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 TICAM1Q8IUC6 712 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 FUNDC1Q8IVP5 155 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 SLC5A11Q8WWX8 675 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 SH3KBP1Q96B97 665 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 SPDL1Q96EA4 605 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 WDR34Q96EX3 536 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 PDXPQ96GD0 296 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 METTL2AQ96IZ6 378 aaKnown RBP17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 TRAPPC9Q96Q05 1148 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 GPATCH1Q9BRR8 931 aaKnown RBP17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 TPSD1Q9BZJ3 242 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms