RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 PPP1R14CQ8TAE6 165 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 DTX3LQ8TDB6 740 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 BRIX1Q8TDN6 353 aaKnown RBP10.72□□□□□ -0.69
RTN3-204ENST00000354497 C8orf44Q96CB5 159 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 FAF2Q96CS3 445 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 IQCDQ96DY2 449 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 LINC00615Q96LM1 132 aaPredicted RBP10.72□□□□□ -0.69
RTN3-204ENST00000354497 RNF157Q96PX1 679 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 NDNQ99608 321 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 SPSB2Q99619 263 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 MESP1Q9BRJ9 268 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 FAM96AQ9H5X1 160 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 WDR54Q9H977 334 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 TMEM165Q9HC07 324 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 SEMA3GQ9NS98 782 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 SPHK1Q9NYA1 384 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 CTSFQ9UBX1 484 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 FAM153AQ9UHL3 310 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 KLHL20Q9Y2M5 609 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 ZGRF1Q86YA3 2104 aa10.72□□□□□ -0.69
RTN3-204ENST00000354497 TACC2O95359 2948 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 C17orf113A0A1B0GUU1 675 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 GMNCA6NCL1 334 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 FAM227AF5H4B4 570 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 APOL1O14791 398 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 TTI1O43156 1089 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 USP1O94782 785 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 HPP00738 406 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 CHRM5P08912 532 aaPredicted RBP10.71□□□□□ -0.69
RTN3-204ENST00000354497 ACPPP15309 386 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 ACADSP16219 412 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 NFKB1P19838 968 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 ATP6V1C1P21283 382 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 KDELR1P24390 212 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 PDHA2P29803 388 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 SHMT2P34897 504 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 PRKCIP41743 596 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 PRLHRP49683 370 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 ARSFP54793 590 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 MYL5Q02045 173 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 SLC5A12Q1EHB4 618 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 TFDP3Q5H9I0 405 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 UNC5AQ6ZN44 842 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 COX15Q7KZN9 410 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 PEX5LQ8IYB4 626 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 MMGT1Q8N4V1 131 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 PLD5Q8N7P1 536 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 OR5AR1Q8NGP9 310 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 RAPGEF5Q92565 580 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 TFGQ92734 400 aaPredicted RBP10.71□□□□□ -0.69
RTN3-204ENST00000354497 OR2A14Q96R47 310 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 OR52A5Q9H2C5 316 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 EURLQ9NYK6 297 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 ABI3Q9P2A4 366 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 FKBPLQ9UIM3 349 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 NXT1Q9UKK6 140 aaKnown RBP10.71□□□□□ -0.69
RTN3-204ENST00000354497 PLAGL1Q9UM63 463 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 MRPS2Q9Y399 296 aaKnown RBP10.71□□□□□ -0.69
RTN3-204ENST00000354497 ARL5AQ9Y689 179 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 MAU2Q9Y6X3 613 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 COMMD3-BMI1R4GMX3 469 aa10.71□□□□□ -0.69
RTN3-204ENST00000354497 PCM1Q15154 2024 aa10.71□□□□□ -0.7
RTN3-204ENST00000354497 DCHS2Q6V1P9 2916 aa10.71□□□□□ -0.7
RTN3-204ENST00000354497 CCDC88CQ9P219 2028 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 NSG1A0A0A6YYJ2 146 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 LOC285095A0A1B0GVY8 99 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 CFAP99D6REC4 459 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 DSCR3O14972 297 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 SGTAO43765 313 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 SRP72O76094 671 aaKnown RBP10.7□□□□□ -0.7
RTN3-204ENST00000354497 ALBP02768 609 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 CYP1A2P05177 515 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 AGAP20933 346 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 PTPN3P26045 913 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 NSG1P42857 185 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 OR1D4P47884 311 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 CSNK1G2P78368 415 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 EEF1A2Q05639 463 aaKnown RBP10.7□□□□□ -0.7
RTN3-204ENST00000354497 BOP1Q14137 746 aaKnown RBP10.7□□□□□ -0.7
RTN3-204ENST00000354497 TEX44Q53QW1 395 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 ANKRD20A2Q5SQ80 823 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 ANKRD20A1Q5TYW2 823 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 ANKRD20A3Q5VUR7 823 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 KDELC1Q6UW63 502 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 ARHGEF18Q6ZSZ5 1173 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 RFX6Q8HWS3 928 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 KIRREL3Q8IZU9 778 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 DNAJC22Q8N4W6 341 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 TC2NQ8N9U0 490 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 CCDC63Q8NA47 563 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 TTC29Q8NA56 475 aaPredicted RBP10.7□□□□□ -0.7
RTN3-204ENST00000354497 OR4K2Q8NGD2 314 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 DNAJB8Q8NHS0 232 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 DENND1AQ8TEH3 1009 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 IFT81Q8WYA0 676 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 ITPKCQ96DU7 683 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 SPOCK3Q9BQ16 436 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 FSD1LQ9BXM9 530 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 GPAMQ9HCL2 828 aa10.7□□□□□ -0.7
RTN3-204ENST00000354497 CUTCQ9NTM9 273 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms