RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CCL27Q9Y4X3 112 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 HSPE1-MOB4S4R3N1 261 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 PNMA8CA0A1B0GUJ8 204 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 SNX4O95219 450 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 AQP1P29972 269 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 RPS19P39019 145 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 PNPLA4P41247 253 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 MXD1Q05195 221 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 C19orf57Q0VDD7 668 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 PXDC1Q5TGL8 231 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 PSAPL1Q6NUJ1 521 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 STX19Q8N4C7 294 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 C3orf58Q8NDZ4 430 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 OR52J3Q8NH60 311 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 RASSF5Q8WWW0 418 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 ASB15Q8WXK1 588 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 CPPED1Q9BRF8 314 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 UCK2Q9BZX2 261 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 MKRN2Q9H000 416 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 RERGLQ9H628 205 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 TMLHEQ9NVH6 421 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 UCKL1Q9NWZ5 548 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 PCP4L1A6NKN8 68 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 FAM25AB3EWG3 89 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 FAM25CB3EWG5 89 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 FAM25GB3EWG6 89 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 GPX5O75715 221 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 CHRM5P08912 532 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 CCNYL3P0C7X3 344 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 ITGA2P17301 1181 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 TNFRSF1BP20333 461 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 FPR1P21462 350 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 MAGEA2P43356 314 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 TBCEQ15813 527 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 UBE2Q1Q7Z7E8 422 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 CALHM3Q86XJ0 350 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 FAM109AQ8N4B1 249 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 YIPF7Q8N8F6 280 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 GRPEL2Q8TAA5 225 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 UTP15Q8TED0 518 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 TRIM63Q969Q1 353 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 OMA1Q96E52 524 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 NSUN3Q9H649 340 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 SERHLQ9NQF3 203 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 RLIMQ9NVW2 624 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 OSER1Q9NX31 292 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 GRXCR2A6NFK2 248 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 CLCA1A8K7I4 914 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 PTGESO14684 152 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 SOX6P35712 828 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 ADCYAP1R1P41586 468 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 NKX3-2P78367 333 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 ALDH6A1Q02252 535 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 GTF2H2Q13888 395 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 PIK3R6Q5UE93 754 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 CACHD1Q5VU97 1274 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 GTF2H2CQ6P1K8 395 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 SLC44A2Q8IWA5 706 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 DEDD2Q8WXF8 326 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 MYLPFQ96A32 169 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 TSSK3Q96PN8 268 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 SPASTQ9UBP0 616 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 TEKT2Q9UIF3 430 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 A3GALT2U3KPV4 340 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 V9GYH0 126 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 TRBV5-3A0A0A0MS03 114 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 LOC285095A0A1B0GVY8 99 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 GLTPD2A6NH11 291 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 HAS3O00219 553 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 WWP2O00308 870 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 KLK8O60259 260 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 MTRF1O75570 445 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 FABP3P05413 133 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 POU2F1P14859 743 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 POU3F3P20264 500 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 TACR1P25103 407 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 LIMK1P53667 647 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 HYAL2Q12891 473 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 EXOC2Q96KP1 924 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 C1QTNF3Q9BXJ4 246 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 GABARAPL1Q9H0R8 117 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 C11orf54Q9H0W9 315 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 SMURF1Q9HCE7 757 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 SNTG1Q9NSN8 517 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 TMPRSS11EQ9UL52 423 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 ERVW-1Q9UQF0 538 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 DLGAP4Q9Y2H0 992 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 GRIP1Q9Y3R0 1128 aa13.06□□□□□ -0.32
CCDC88C-201ENST00000331194 SCAMP3O14828 347 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 FGF10O15520 208 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 TSC22D2O75157 780 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 GPR32O75388 356 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 ACVRL1P37023 503 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 ZXDBP98169 803 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 AFMIDQ63HM1 303 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 NADSYN1Q6IA69 706 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 DPY19L3Q6ZPD9 716 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 RGL4Q8IZJ4 473 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 ANGPTL6Q8NI99 470 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms