RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 NPHS1O60500 1241 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 CDC40O60508 579 aaKnown RBP eCLIP13.14□□□□□ -0.31
RFFL-201ENST00000315249 SHOX2O60902 331 aaPredicted RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 NR2F6P10588 404 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 SNTA1Q13424 505 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 DECR1Q16698 335 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 RLN3Q8WXF3 142 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 TOX2Q96NM4 488 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 SEC61A2Q9H9S3 476 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 PRPF19Q9UMS4 504 aaKnown RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 ZBTB11O95625 1053 aaPredicted RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 CCNOP22674 350 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 CRISP3P54108 245 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 PRKD1Q15139 912 aaPredicted RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 LYSMD4Q5XG99 296 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 CXorf57Q6NSI4 855 aaKnown RBP13.14□□□□□ -0.31
RFFL-201ENST00000315249 TMPRSS9Q7Z410 1059 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 KCND1Q9NSA2 647 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 KNL1Q8NG31 2342 aa13.14□□□□□ -0.31
RFFL-201ENST00000315249 ASNA1O43681 348 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 OR2B3O76000 313 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 UNC5CO95185 931 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 APBB3O95704 486 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 CYB5AP00167 134 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 NCK1P16333 377 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 RANBP1P43487 201 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 SRP54P61011 504 aaKnown RBP13.13□□□□□ -0.31
RFFL-201ENST00000315249 HHEXQ03014 270 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 CD47Q08722 323 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 SH3YL1Q96HL8 342 aaPredicted RBP13.13□□□□□ -0.31
RFFL-201ENST00000315249 PTCHD1Q96NR3 888 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 GIN1Q9NXP7 522 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.13□□□□□ -0.31
RFFL-201ENST00000315249 ABRAXAS1Q6UWZ7 409 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 ENKURQ8TC29 256 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 ZDHHC1Q8WTX9 485 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 Q9N2J8 555 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 C11orf16Q9NQ32 467 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 IGKV6D-21A0A0A0MT36 114 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 SOX9P48436 509 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 DNASE1L1P49184 302 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 ZNF267Q14586 743 aaPredicted RBP13.13□□□□□ -0.31
RFFL-201ENST00000315249 CILP2Q8IUL8 1156 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 SIT1Q9Y3P8 196 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 OR5K4A6NMS3 321 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 CXorf49A8MYA2 514 aaPredicted RBP13.13□□□□□ -0.31
RFFL-201ENST00000315249 C12orf40Q86WS4 652 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 TBC1D21Q8IYX1 336 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 NMUR2Q9GZQ4 415 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 NLE1Q9NVX2 485 aaPredicted RBP13.13□□□□□ -0.31
RFFL-201ENST00000315249 MCUBQ9NWR8 336 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 VEGFDO43915 354 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 OR1I1O60431 355 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 ARMC3Q5W041 872 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 PLXDC1Q8IUK5 500 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 SETD6Q8TBK2 473 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 UBASH3BQ8TF42 649 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 ZNF304Q9HCX3 659 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 PRTFDC1Q9NRG1 225 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 ADRB3P13945 408 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 SLC6A9P48067 706 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 ZBED3Q96IU2 234 aaPredicted RBP13.13□□□□□ -0.31
RFFL-201ENST00000315249 HHIPL1Q96JK4 782 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 COL21A1Q96P44 957 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 IFT27Q9BW83 186 aa13.13□□□□□ -0.31
RFFL-201ENST00000315249 MKKSQ9NPJ1 570 aaPredicted RBP13.13□□□□□ -0.31
RFFL-201ENST00000315249 ITGA3P26006 1051 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 SLC9A4Q6AI14 798 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 RASSF6Q6ZTQ3 369 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 TMEM139Q8IV31 216 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 TRAM1L1Q8N609 369 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 SLC35B2Q8TB61 432 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 HAPLN2Q9GZV7 340 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 VRTNQ9H8Y1 702 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 PLGRKTQ9HBL7 147 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 A0A087WXM4 84 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 SNX4O95219 450 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 LINGO3P0C6S8 592 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 ZNF41P51814 821 aaPredicted RBP13.12□□□□□ -0.31
RFFL-201ENST00000315249 ARFIP1P53367 373 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 KCNJ2P63252 427 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 GANABQ14697 944 aaKnown RBP13.12□□□□□ -0.31
RFFL-201ENST00000315249 TLR1Q15399 786 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 DGUOKQ16854 277 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 DCAF12L1Q5VU92 463 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 RASGEF1AQ8N9B8 481 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 R3HDMLQ9H3Y0 253 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 SLC35C2Q9NQQ7 365 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 P2RX2Q9UBL9 471 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 IGFBP5P24593 272 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 CACNA2D1P54289 1103 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 MC1RQ01726 317 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 EMC10Q5UCC4 262 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 OR10Q1Q8NGQ4 319 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 ZNF570Q96NI8 536 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 CCDC28BQ9BUN5 200 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 MAGEE1Q9HCI5 957 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 SPATA7Q9P0W8 599 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 PUM1Q14671 1186 aaKnown RBP eCLIP13.12□□□□□ -0.31
RFFL-201ENST00000315249 SMYD5Q6GMV2 418 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms