RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 HAPLN1P10915 354 aaPredicted RBP14.97□□□□□ -0.01
SHH-201ENST00000297261 PRPS2P11908 318 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 FPR1P21462 350 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 CREMQ03060 361 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 KCNJ8Q15842 424 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 XKR4Q5GH76 650 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 CILP2Q8IUL8 1156 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 HHIPL1Q96JK4 782 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 DSN1Q9H410 356 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 CCDC177Q9NQR7 707 aaPredicted RBP14.97□□□□□ -0.01
SHH-201ENST00000297261 THUMPD1Q9NXG2 353 aaKnown RBP14.97□□□□□ -0.01
SHH-201ENST00000297261 TAS2R9Q9NYW1 312 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 J3KR12 359 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 FFAR2O15552 330 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 CNTN5O94779 1100 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 PRAMEF1O95521 474 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 GLUD1P00367 558 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 OGNP20774 298 aaKnown RBP14.96□□□□□ -0.01
SHH-201ENST00000297261 CTGFP29279 349 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 MAGEA11P43364 429 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 STARP49675 285 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 GPAT3Q53EU6 434 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 IFI44LQ53G44 452 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 RTP2Q5QGT7 225 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 DCST1Q5T197 706 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 PIK3R6Q5UE93 754 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 FAM171BQ6P995 826 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 CXXC5Q7LFL8 322 aaKnown RBP14.96□□□□□ -0.01
SHH-201ENST00000297261 GSDMCQ9BYG8 508 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 SGK2Q9HBY8 427 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 CPQQ9Y646 472 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 NUMA1Q14980 2115 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 SERPINB7O75635 380 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 CCNB2O95067 398 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 ANXA8P13928 327 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 GSTM2P28161 218 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 MAPKAPK2P49137 400 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 C2CD4AQ8NCU7 369 aaPredicted RBP14.96□□□□□ -0.01
SHH-201ENST00000297261 OR4F6Q8NGB9 312 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 SH3YL1Q96HL8 342 aaPredicted RBP14.96□□□□□ -0.01
SHH-201ENST00000297261 MEAF6Q9HAF1 191 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 ZFYVE1Q9HBF4 777 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 SEMA3GQ9NS98 782 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 DNAJC11Q9NVH1 559 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 PCDHB1Q9Y5F3 818 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 MAGED1Q9Y5V3 778 aaPredicted RBP14.96□□□□□ -0.01
SHH-201ENST00000297261 AP3D1O14617 1153 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 UGT2B17O75795 530 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 ALDH1A2O94788 518 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 OAZ2O95190 189 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 MANFP55145 182 aaKnown RBP14.96□□□□□ -0.01
SHH-201ENST00000297261 ZNF45Q02386 682 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 NAE1Q13564 534 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 GRM2Q14416 872 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 ZNF267Q14586 743 aaPredicted RBP14.96□□□□□ -0.01
SHH-201ENST00000297261 CLCA4Q14CN2 919 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 MS4A13Q5J8X5 152 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 KIAA1614Q5VZ46 1190 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 ANKRD26P1Q6NSI1 321 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 MYOCQ99972 504 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 CHIAQ9BZP6 476 aa14.96□□□□□ -0.01
SHH-201ENST00000297261 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.96□□□□□ -0.01
SHH-201ENST00000297261 EIF3KQ9UBQ5 218 aaKnown RBP14.96□□□□□ -0.01
SHH-201ENST00000297261 A0A1B0GVM2 712 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 ZNF701M0R085 212 aaPredicted RBP14.96□□□□□ -0.02
SHH-201ENST00000297261 RLN1P04808 185 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 ENGP17813 658 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 CDH4P55283 916 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 POM121L1PQ3SYA9 428 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 UNC50Q53HI1 259 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 GCNT6Q5T4J0 391 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 LCN8Q6JVE9 175 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 NPWQ8N729 165 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 OR13J1Q8NGT2 312 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 CSGALNACT1Q8TDX6 532 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 CLP1Q92989 425 aaKnown RBP14.96□□□□□ -0.02
SHH-201ENST00000297261 SLC38A4Q969I6 547 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 ZDHHC6Q9H6R6 413 aa14.96□□□□□ -0.02
SHH-201ENST00000297261 ELAC1Q9H777 363 aaKnown RBP14.96□□□□□ -0.02
SHH-201ENST00000297261 FGBP02675 491 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 SMIM18P0DKX4 95 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 NUP62P37198 522 aaPredicted RBP14.95□□□□□ -0.02
SHH-201ENST00000297261 IL10RBQ08334 325 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 SIRPB2Q5JXA9 342 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 DNAJB7Q7Z6W7 309 aaPredicted RBP14.95□□□□□ -0.02
SHH-201ENST00000297261 HS3ST5Q8IZT8 346 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 GHDCQ8N2G8 530 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 EEF1AKMT1Q8WVE0 214 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 RDH12Q96NR8 316 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 BRD9Q9H8M2 597 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 OLAHQ9NV23 265 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 PFDN2Q9UHV9 154 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 A0A1B0GTW7 788 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 CCL16O15467 120 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 CDRT1O95170 752 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 ESR1P03372 595 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 BMP7P18075 431 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 AGXTP21549 392 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 CD72P21854 359 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 Q6ZNX1 250 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms