RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 AASSQ9UDR5 926 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 CLEC4EQ9ULY5 219 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 SAMHD1Q9Y3Z3 626 aaKnown RBP18.17■□□□□ 0.5
CPSF3-201ENST00000238112 MAGEB17A8MXT2 336 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 UGT2B4P06133 528 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 CDH3P22223 829 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 CD70P32970 193 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 KDELR2P33947 212 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 PTSQ03393 145 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 PLEKHG6Q3KR16 790 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 VTCN1Q7Z7D3 282 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 GALNT10Q86SR1 603 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 P2RY8Q86VZ1 359 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 PGBD3Q8N328 593 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 ZNF540Q8NDQ6 660 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 S100ZQ8WXG8 99 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 MAGEB10Q96LZ2 347 aaPredicted RBP18.16■□□□□ 0.5
CPSF3-201ENST00000238112 ZNF334Q9HCZ1 680 aaPredicted RBP18.16■□□□□ 0.5
CPSF3-201ENST00000238112 TOR1BO14657 336 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 AXIN1O15169 862 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 JRKO75564 520 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 KCNK5O95279 499 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 MPC1LP0DKB6 136 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 COX7A2P14406 83 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 PSMB9P28065 219 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 SERPINB10P48595 397 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 VLDLRP98155 873 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 KCNC4Q03721 635 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 CHIT1Q13231 466 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 SP140Q13342 867 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 RFLNAQ6ZTI6 216 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 TRIM74Q86UV6 250 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 TRIM73Q86UV7 250 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 VRK3Q8IV63 474 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 SVOPQ8N4V2 548 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 ATG16L2Q8NAA4 619 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 ZBTB8BQ8NAP8 495 aaPredicted RBP18.16■□□□□ 0.5
CPSF3-201ENST00000238112 KLHL23Q8NBE8 558 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 CDC26Q8NHZ8 85 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 HSH2DQ96JZ2 352 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 P2RY13Q9BPV8 354 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 KRT84Q9NSB2 600 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 SRRDQ9UH36 339 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 DAPK2Q9UIK4 370 aa18.16■□□□□ 0.5
CPSF3-201ENST00000238112 ABT1Q9ULW3 272 aaKnown RBP18.16■□□□□ 0.5
CPSF3-201ENST00000238112 IGLV3-16A0A075B6K0 115 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 SOD2P04179 222 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 JUPP14923 745 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 LHCGRP22888 699 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 ST13P50502 369 aaKnown RBP18.15■□□□□ 0.5
CPSF3-201ENST00000238112 LSM3P62310 102 aaKnown RBP18.15■□□□□ 0.5
CPSF3-201ENST00000238112 CBX3Q13185 183 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 DGCR6Q14129 220 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 DGUOKQ16854 277 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 MPPE1Q53F39 396 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 LHX8Q68G74 356 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 RNF175Q8N4F7 328 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 NDNFQ8TB73 568 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 VMP1Q96GC9 406 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 ATG10Q9H0Y0 220 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 SUV39H2Q9H5I1 410 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 REEP1Q9H902 201 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 CCNB1IP1Q9NPC3 277 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 SH3BP1Q9Y3L3 701 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 ANAPC1Q9H1A4 1944 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 SERTM1A2A2V5 107 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 SLC16A5O15375 505 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 RGS10O43665 173 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 PRMT3O60678 531 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 FAM20BO75063 409 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 CPSF4O95639 269 aaKnown RBP18.15■□□□□ 0.5
CPSF3-201ENST00000238112 FADS2O95864 444 aaKnown RBP18.15■□□□□ 0.5
CPSF3-201ENST00000238112 C1QCP02747 245 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 SEMG1P04279 462 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 GPX2P18283 190 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 STK19P49842 368 aaPredicted RBP18.15■□□□□ 0.5
CPSF3-201ENST00000238112 AP1S2P56377 157 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 GBX1Q14549 363 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 CYP2A13Q16696 494 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 UGT8Q16880 541 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 ADPRMQ3LIE5 342 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 SPOUT1Q5T280 376 aaKnown RBP18.15■□□□□ 0.5
CPSF3-201ENST00000238112 LINC00299Q6ZSB3 139 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 EIF3MQ7L2H7 374 aaKnown RBP18.15■□□□□ 0.5
CPSF3-201ENST00000238112 BTLAQ7Z6A9 289 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 ADCK1Q86TW2 530 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 RAET1EQ8TD07 263 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 YIPF6Q96EC8 236 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 ARMC7Q9H6L4 198 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 AKIP1Q9NQ31 210 aa18.15■□□□□ 0.5
CPSF3-201ENST00000238112 TRNAU1APQ9NX07 287 aaKnown RBP18.15■□□□□ 0.5
CPSF3-201ENST00000238112 NDRG4Q9ULP0 352 aaKnown RBP18.15■□□□□ 0.5
CPSF3-201ENST00000238112 TET1Q8NFU7 2136 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 KRT87PA6NCN2 255 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 PRAMEF4O60810 478 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 NADKO95544 446 aaPredicted RBP18.14■□□□□ 0.49
CPSF3-201ENST00000238112 OLFM2O95897 454 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 MT-ND2P03891 347 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 SRCP12931 536 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 ATP1B2P14415 290 aaPredicted RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms