RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PCSK4Q6UW60 755 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 SBSNQ6UWP8 590 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 CEACAM20Q6UY09 585 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 BMPERQ8N8U9 685 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 ATL1Q8WXF7 558 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 EXT2Q93063 718 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 DHRS4Q9BTZ2 278 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 ASPSCR1Q9BZE9 553 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 ATG10Q9H0Y0 220 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 FETUBQ9UGM5 382 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 TAC3Q9UHF0 121 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 RNF112Q9ULX5 631 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 OARD1Q9Y530 152 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 E7ENX8 843 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 S100BP04271 92 aaPredicted RBP17.41■□□□□ 0.38
CLN3-239ENST00000628023 ANXA5P08758 320 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 FOLR1P15328 257 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 MAGP20916 626 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 GMPRP36959 345 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 SLC26A3P40879 764 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 IRF9Q00978 393 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 TAP2Q03519 686 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 NAE1Q13564 534 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 PPP1R3AQ16821 1122 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 FAM83EQ2M2I3 478 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 KLC3Q6P597 504 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 ADGRD1Q6QNK2 874 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 AGTRAPQ6RW13 159 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 GPSM1Q86YR5 675 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 D2HGDHQ8N465 521 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 OR2L3Q8NG85 312 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 KCTD4Q8WVF5 259 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 TTC9Q92623 222 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 CAVIN3Q969G5 261 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 MTBPQ96DY7 904 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 TCTN2Q96GX1 697 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 UBXN10Q96LJ8 280 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 TSNARE1Q96NA8 513 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 TEFMQ96QE5 360 aaKnown RBP17.41■□□□□ 0.38
CLN3-239ENST00000628023 DDA1Q9BW61 102 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 TWSG1Q9GZX9 223 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 NMRAL1Q9HBL8 299 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 MRPS30Q9NP92 439 aaKnown RBP17.41■□□□□ 0.38
CLN3-239ENST00000628023 FBXO8Q9NRD0 319 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 ACSL6Q9UKU0 697 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 RARRES3Q9UL19 164 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 RAB21Q9UL25 225 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 KLHL20Q9Y2M5 609 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 ANKRD12Q6UB98 2062 aa17.41■□□□□ 0.38
CLN3-239ENST00000628023 COL6A6A6NMZ7 2263 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 ZNF462Q96JM2 2506 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 A0A1W2PPV9 198 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 NCF1BA6NI72 391 aaPredicted RBP17.4■□□□□ 0.38
CLN3-239ENST00000628023 NCF1CA8MVU1 366 aaPredicted RBP17.4■□□□□ 0.38
CLN3-239ENST00000628023 SHBGP04278 402 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 PLA2G2AP14555 144 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 NCF1P14598 390 aaPredicted RBP17.4■□□□□ 0.38
CLN3-239ENST00000628023 TFEBP19484 476 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 CCND1P24385 295 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 GCAP28676 217 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 SLCO1A2P46721 670 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 IFFO1Q0D2I5 559 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 NAA30Q147X3 362 aaPredicted RBP17.4■□□□□ 0.38
CLN3-239ENST00000628023 NAA25Q14CX7 972 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 OR4D1Q15615 310 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 GPR19Q15760 415 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 PRAMEF13Q5VWM6 474 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 KIAA1614Q5VZ46 1190 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 CAPN13Q6MZZ7 669 aaPredicted RBP17.4■□□□□ 0.38
CLN3-239ENST00000628023 PPP1R3BQ86XI6 285 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 CNPY4Q8N129 248 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 OR2A1Q8NGT9 310 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 PMEPA1Q969W9 287 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 PTERQ96BW5 349 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 FBXL8Q96CD0 374 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 ZPBPQ9BS86 351 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 PCBD2Q9H0N5 130 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 ALG9Q9H6U8 611 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 PPCSQ9HAB8 311 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 APMAPQ9HDC9 416 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 FGF21Q9NSA1 209 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 IGSF5Q9NSI5 407 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 IRAK4Q9NWZ3 460 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 FOXJ2Q9P0K8 574 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 TBK1Q9UHD2 729 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 B3GALT1Q9Y5Z6 326 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 ATMQ13315 3056 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 AHCTF1Q8WYP5 2266 aa17.4■□□□□ 0.38
CLN3-239ENST00000628023 TMEM150CB9EJG8 249 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 C9orf172C9J069 976 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 PRICKLE3O43900 615 aaPredicted RBP17.39■□□□□ 0.37
CLN3-239ENST00000628023 LIPCP11150 499 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 CDKL1Q00532 357 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 LY6DQ14210 128 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 IL11RAQ14626 422 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 DEFB110Q30KQ9 67 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 ICE2Q659A1 982 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 FIGLAQ6QHK4 219 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 CDHR3Q6ZTQ4 885 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 ADCK2Q7Z695 626 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms