RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ZUFSPQ96AP4 578 aa18.4■□□□□ 0.54
SQSTM1-216ENST00000626660 HAUS8Q9BT25 410 aa18.4■□□□□ 0.54
SQSTM1-216ENST00000626660 SGPP1Q9BX95 441 aa18.4■□□□□ 0.54
SQSTM1-216ENST00000626660 FANCEQ9HB96 536 aa18.4■□□□□ 0.54
SQSTM1-216ENST00000626660 ZNF358Q9NW07 568 aa18.4■□□□□ 0.54
SQSTM1-216ENST00000626660 SLC39A1Q9NY26 324 aa18.4■□□□□ 0.54
SQSTM1-216ENST00000626660 ADAMTS20P59510 1910 aa18.4■□□□□ 0.54
SQSTM1-216ENST00000626660 A0A1W2PNU3 283 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 UBXN8O00124 270 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 IPO13O94829 963 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 TNFSF15O95150 251 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 EBLN1P0CF75 366 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 FGF3P11487 239 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 GFAPP14136 432 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 ITIH1P19827 911 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 KCNC1P48547 511 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 RAB15P59190 212 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 KCNAB1Q14722 419 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 PTCHD3Q3KNS1 767 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 TMEM164Q5U3C3 297 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 C17orf64Q86WR6 236 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 N4BP2L2Q92802 583 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 PYCR2Q96C36 320 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 ZIM3Q96PE6 472 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 MRPL57Q9BQC6 102 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 DPH7Q9BTV6 452 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 CHRNA10Q9GZZ6 450 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 MRPL46Q9H2W6 279 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 SIDT1Q9NXL6 827 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 ANKMY1Q9P2S6 941 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 DCDC2Q9UHG0 476 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 TMCO1Q9UM00 188 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 SNX7Q9UNH6 387 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 KLHL20Q9Y2M5 609 aa18.39■□□□□ 0.53
SQSTM1-216ENST00000626660 PMS2P1A4D2B8 440 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 TARM1B6A8C7 271 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 RGS16O15492 202 aaPredicted RBP18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 SMIM24O75264 130 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 GLRA3O75311 464 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 HRH2P25021 359 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 ETV5P41161 510 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 GRIA3P42263 894 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 SH3BP2P78314 561 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 TUBB3Q13509 450 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 CEP85LQ5SZL2 805 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 IGF2-ASQ6U949 168 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 BMPERQ8N8U9 685 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 OR6C1Q96RD1 312 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 TAAR9Q96RI9 348 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 RUFY1Q96T51 708 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 ASPSCR1Q9BZE9 553 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 FBXO8Q9NRD0 319 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 FGF21Q9NSA1 209 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 CPSF2Q9P2I0 782 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 XPR1Q9UBH6 696 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 PTBP2Q9UKA9 531 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 DYRK1BQ9Y463 629 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 KLK4Q9Y5K2 254 aa18.38■□□□□ 0.53
SQSTM1-216ENST00000626660 FOXO6A8MYZ6 492 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 COPEO14579 308 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 POLR1CO15160 346 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 STK16O75716 305 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 WDR47O94967 919 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 FOLR1P15328 257 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 KRT4P19013 534 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 GGT5P36269 586 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 CCT5P48643 541 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 IL11RAQ14626 422 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 ZIC1Q15915 447 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 ZXDCQ2QGD7 858 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 ZC3H12BQ5HYM0 836 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 DCAF12Q5T6F0 453 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 CEACAM20Q6UY09 585 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 ADCK2Q7Z695 626 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 TRABD2AQ86V40 505 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 THOC6Q86W42 341 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 OR8K5Q8NH50 307 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 USP7Q93009 1102 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 PRR11Q96HE9 360 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 SLC46A1Q96NT5 459 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 TEFMQ96QE5 360 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 CENPHQ9H3R5 247 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 SLC6A20Q9NP91 592 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 RARRES3Q9UL19 164 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 KCNE2Q9Y6J6 123 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 ZFHX4Q86UP3 3567 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 SPTBP11277 2137 aa18.37■□□□□ 0.53
SQSTM1-216ENST00000626660 MAP2K7O14733 419 aa18.36■□□□□ 0.53
SQSTM1-216ENST00000626660 TAPBPO15533 448 aa18.36■□□□□ 0.53
SQSTM1-216ENST00000626660 BRINP1O60477 761 aa18.36■□□□□ 0.53
SQSTM1-216ENST00000626660 PRAMEF10O60809 474 aa18.36■□□□□ 0.53
SQSTM1-216ENST00000626660 DXOO77932 396 aaKnown RBP18.36■□□□□ 0.53
SQSTM1-216ENST00000626660 MSL3P1P0C860 447 aa18.36■□□□□ 0.53
SQSTM1-216ENST00000626660 NPPBP16860 134 aa18.36■□□□□ 0.53
SQSTM1-216ENST00000626660 TAC1P20366 129 aa18.36■□□□□ 0.53
SQSTM1-216ENST00000626660 SLC6A12P48065 614 aa18.36■□□□□ 0.53
SQSTM1-216ENST00000626660 HSPA7P48741 367 aa18.36■□□□□ 0.53
SQSTM1-216ENST00000626660 GPR19Q15760 415 aa18.36■□□□□ 0.53
SQSTM1-216ENST00000626660 PFKFB4Q16877 469 aa18.36■□□□□ 0.53
SQSTM1-216ENST00000626660 C18orf21Q32NC0 220 aaPredicted RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms