RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 PNLIPRP1P54315 467 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 MS4A2Q01362 244 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 ZNF184Q99676 751 aaPredicted RBP15.24■□□□□ 0.03
CPSF1-213ENST00000620219 CCT7Q99832 543 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 Q9H521 79 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 DLGAP2Q9P1A6 1054 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 SUFUQ9UMX1 484 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 MAP1BP46821 2468 aaKnown RBP15.24■□□□□ 0.03
CPSF1-213ENST00000620219 EPORP19235 508 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 CAPN3P20807 821 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 AQP1P29972 269 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 HPCAL1P37235 193 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 CCNYL2Q5T2Q4 361 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 PDPRQ8NCN5 879 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 TOE1Q96GM8 510 aaKnown RBP15.24■□□□□ 0.03
CPSF1-213ENST00000620219 APOOQ9BUR5 198 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 COLEC10Q9Y6Z7 277 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 FEZF1A0PJY2 475 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 TMEM247A6NEH6 219 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 FGF4P08620 206 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 MTHFD1P11586 935 aaKnown RBP15.24■□□□□ 0.03
CPSF1-213ENST00000620219 MTTPP55157 894 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 LIPEQ05469 1076 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 GALNT1Q10472 559 aaPredicted RBP15.24■□□□□ 0.03
CPSF1-213ENST00000620219 SNAP47Q5SQN1 464 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 SLC13A3Q8WWT9 602 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 POM121BA6NF01 834 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 MAGEB17A8MXT2 336 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 OR7A17O14581 309 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 TNFRSF4P43489 277 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 CCNIQ14094 377 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 OR4F3Q6IEY1 312 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 FAM180BQ6P0A1 224 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 FAM160A2Q8N612 972 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-213ENST00000620219 ZNF480Q8WV37 535 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 SLC5A11Q8WWX8 675 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 NEIL2Q969S2 332 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 ASPSCR1Q9BZE9 553 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 NOTCH4Q99466 2003 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 C5orf58C9J3I9 102 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 TIPRLO75663 272 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 ZNF23P17027 643 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 TYRP1P17643 537 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 EIF2DP41214 584 aaKnown RBP15.23■□□□□ 0.03
CPSF1-213ENST00000620219 CRATP43155 626 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 OTUD3Q5T2D3 398 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-213ENST00000620219 PIP5KL1Q5T9C9 394 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 CPTPQ5TA50 214 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 PRMT9Q6P2P2 845 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 NEK5Q6P3R8 708 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 TMEM154Q6P9G4 183 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 TMIGD1Q6UXZ0 262 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 OR10A6Q8NH74 314 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 AURKBQ96GD4 344 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-213ENST00000620219 OR2M4Q96R27 311 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 TMEM79Q9BSE2 394 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 THEGQ9P2T0 379 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 TRPC4Q9UBN4 977 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 TANC1Q9C0D5 1861 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 KLK1P06870 262 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 FCARP24071 287 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 DCDC1P59894 354 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 KLC1Q07866 573 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 PRRT3Q5FWE3 981 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 CNBD2Q96M20 576 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 HDAC8Q9BY41 377 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 RTCAO00442 366 aaKnown RBP15.23■□□□□ 0.03
CPSF1-213ENST00000620219 PSMB5P28074 263 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 TFF2Q03403 129 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 HTR4Q13639 388 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 ZCCHC10Q8TBK6 192 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 WDR92Q96MX6 357 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 ZNF570Q96NI8 536 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 KLHL4Q9C0H6 718 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 TMPRSS11EQ9UL52 423 aa15.23■□□□□ 0.03
CPSF1-213ENST00000620219 PLXNA3P51805 1871 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 PCDH7O60245 1069 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 EPN2O95208 641 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 CHRNB3Q05901 458 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 TRAF3Q13114 568 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 ADGRE1Q14246 886 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 FBXO43Q4G163 708 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 FAM91A1Q658Y4 838 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 ZCCHC8Q6NZY4 707 aaKnown RBP15.22■□□□□ 0.03
CPSF1-213ENST00000620219 SIX5Q8N196 739 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 CLEC4FQ8N1N0 589 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 OR2T11Q8NH01 316 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 SMPDL3AQ92484 453 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 LRRC58Q96CX6 371 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 LMLNQ96KR4 655 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 COQ10AQ96MF6 247 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 SH3GL1Q99961 368 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 AP4S1Q9Y587 144 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 NPC1O15118 1278 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 PEX1O43933 1283 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 ATP6V1B2P21281 511 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 PPP2CBP62714 309 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 PPP2CAP67775 309 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 EMX2Q04743 252 aa15.22■□□□□ 0.03
CPSF1-213ENST00000620219 TDGQ13569 410 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms