RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ZNF787Q6DD87 383 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 FAAH2Q6GMR7 532 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 SUSD1Q6UWL2 747 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 Q6ZS92 163 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 SPNS2Q8IVW8 549 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 MAGEC3Q8TD91 643 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 MIEF2Q96C03 454 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 C5orf34Q96MH7 638 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 DPH7Q9BTV6 452 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 LHPPQ9H008 270 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 ZNF160Q9HCG1 818 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 AGPAT4Q9NRZ5 378 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 IL1RAPL1Q9NZN1 696 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 GALPQ9UBC7 116 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 NOVA2Q9UNW9 492 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 MRFAP1Q9Y605 127 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 NUP210LQ5VU65 1888 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 E5RI56 91 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 PFDN6O15212 129 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 SRPX2O60687 465 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 FBLP22087 321 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 CDC25BP30305 580 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 CXCR5P32302 372 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 KLC1Q07866 573 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 ACSBG2Q5FVE4 666 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 VWA2Q5GFL6 755 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 MPP5Q8N3R9 675 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 OR11G2Q8NGC1 345 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 OR2A1Q8NGT9 310 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 STT3BQ8TCJ2 826 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 VPS50Q96JG6 964 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 BIRC8Q96P09 236 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 EPS8L2Q9H6S3 715 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 MRM3Q9HC36 420 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 MRPS30Q9NP92 439 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 SEMA3GQ9NS98 782 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 C3orf18Q9UK00 162 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 NXT1Q9UKK6 140 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 SLC5A6Q9Y289 635 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 SVILO95425 2214 aa16.79■□□□□ 0.28
SHKBP1-223ENST00000600552 A0A1W2PPV9 198 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 H0YGG7 62 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 AP3B1O00203 1094 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 MAP2K7O14733 419 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 SYF2O95926 243 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 ZGLP1P0C6A0 271 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 ARNTP27540 789 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 ARF3P61204 181 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 ANKRD20A4Q4UJ75 823 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 FBXO42Q6P3S6 717 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 LRRC8BQ6P9F7 803 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 C4orf22Q6V702 233 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 MAMDC2Q7Z304 686 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 ADCK2Q7Z695 626 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 PPFIBP2Q8ND30 876 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 CATSPER1Q8NEC5 780 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 OR9A1PQ8NGU1 263 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 UBE2Q2Q8WVN8 375 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 LPGAT1Q92604 370 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 MAGEB10Q96LZ2 347 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 ZNF285Q96NJ3 590 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 TRIM56Q9BRZ2 755 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 KIFC1Q9BW19 673 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 SLC26A1Q9H2B4 701 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 ZNF282Q9UDV7 671 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 SOX13Q9UN79 622 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 TEX15Q9BXT5 2789 aa16.78■□□□□ 0.28
SHKBP1-223ENST00000600552 NBPF19A0A087WUL8 3843 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 CTAGE9A4FU28 777 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 FITM1A5D6W6 292 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 ARHGEF33A8MVX0 844 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 FKBP9O95302 570 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 CLDN1O95832 211 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 ONECUT2O95948 504 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 STATHP02808 62 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 ACPPP15309 386 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 CARSP49589 748 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 EEF1A2Q05639 463 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 Q0VFX4 171 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 GPS1Q13098 491 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 ZNF169Q14929 603 aaPredicted RBP16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 MUM1Q2TAK8 710 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 KLHL38Q2WGJ6 581 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 CRB2Q5IJ48 1285 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 RNF187Q5TA31 235 aaPredicted RBP16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 LAPTM4BQ86VI4 370 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 GRHL3Q8TE85 626 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 MAIP1Q8WWC4 291 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 PKP4Q99569 1192 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 ZFYVE21Q9BQ24 234 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 PLA2G3Q9NZ20 509 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 SPATA7Q9P0W8 599 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 TRPC4Q9UBN4 977 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 OSGIN2Q9Y236 505 aa16.77■□□□□ 0.28
SHKBP1-223ENST00000600552 VSTM2BA6NLU5 285 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 H3BMM5 538 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 GOLGA8MH3BSY2 632 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 KLHL18O94889 574 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 F10P00742 488 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 LDLRP01130 860 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms