RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 STK40Q8N2I9 435 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 SLC43A3Q8NBI5 491 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 PROX1Q92786 737 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 APIPQ96GX9 242 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 MYO19Q96H55 970 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 RERGLQ9H628 205 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 GORASP2Q9H8Y8 452 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 AREL1O15033 823 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 TEX28O15482 410 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 IDH3BO43837 385 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 KLK8O60259 260 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 TMCC2O75069 709 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 TSC22D2O75157 780 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 UGT2B11O75310 529 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 ENDOUP21128 410 aaKnown RBP14.86□□□□□ -0.03
UPF1-204ENST00000596842 MAD2L1Q13257 205 aaPredicted RBP14.86□□□□□ -0.03
UPF1-204ENST00000596842 DSC3Q14574 896 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 CATSPEREQ5SY80 951 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 RFLNAQ6ZTI6 216 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 SYT12Q8IV01 421 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 CLECL1Q8IZS7 167 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 RBFAQ8N0V3 343 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 TTC30BQ8N4P2 665 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 GPR156Q8NFN8 814 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 RMND5AQ9H871 391 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 ZBTB20Q9HC78 741 aaPredicted RBP14.86□□□□□ -0.03
UPF1-204ENST00000596842 TMEFF2Q9UIK5 374 aaPredicted RBP14.86□□□□□ -0.03
UPF1-204ENST00000596842 SLC22A14Q9Y267 594 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 TESMINQ9Y4I5 508 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 SNX8Q9Y5X2 465 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 A0A096LPI6 279 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 RGS10O43665 173 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 CLDN9O95484 217 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 GTF2E2P29084 291 aaKnown RBP14.85□□□□□ -0.03
UPF1-204ENST00000596842 C21orf33P30042 268 aaPredicted RBP14.85□□□□□ -0.03
UPF1-204ENST00000596842 DAPP51397 102 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 PCBP2Q15366 365 aaKnown RBP eCLIP14.85□□□□□ -0.03
UPF1-204ENST00000596842 FAM214AQ32MH5 1076 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 SPATS1Q496A3 300 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 LAIR1Q6GTX8 287 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 VASH1Q7L8A9 365 aaPredicted RBP14.85□□□□□ -0.03
UPF1-204ENST00000596842 AADATQ8N5Z0 425 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 SCN4AP35499 1836 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 A0A1B0GVM2 712 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 GLTPD2A6NH11 291 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 GUCY1B2O75343 617 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 UGT2B4P06133 528 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 JUNBP17275 347 aaPredicted RBP14.85□□□□□ -0.03
UPF1-204ENST00000596842 ENGP17813 658 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 SMAD3P84022 425 aaKnown RBP14.85□□□□□ -0.03
UPF1-204ENST00000596842 VLDLRP98155 873 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 TP53BP2Q13625 1128 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 OR2T5Q6IEZ7 315 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 FUT10Q6P4F1 479 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 OR2T29Q8NH02 315 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 FPGTO14772 594 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 ANXA5P08758 320 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 HIST1H2AGP0C0S8 130 aaPredicted RBP14.85□□□□□ -0.03
UPF1-204ENST00000596842 COX7A2P14406 83 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 ALOX12P18054 663 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 HIST1H2ADP20671 130 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 CSKP41240 450 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 HIST1H2AHQ96KK5 128 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 HIST1H2AJQ99878 128 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 H2AFJQ9BTM1 129 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 WDR12Q9GZL7 423 aaKnown RBP14.85□□□□□ -0.03
UPF1-204ENST00000596842 REXO4Q9GZR2 422 aaKnown RBP14.85□□□□□ -0.03
UPF1-204ENST00000596842 REEP1Q9H902 201 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 IL26Q9NPH9 171 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 PCDHGA10Q9Y5H3 936 aa14.85□□□□□ -0.03
UPF1-204ENST00000596842 GLYATL1P3A0A0U1RQE8 302 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 STC2O76061 302 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 CR2P20023 1033 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 CTGFP29279 349 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 HOXC8P31273 242 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 BCL2L1Q07817 233 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 TOP3AQ13472 1001 aaPredicted RBP14.84□□□□□ -0.03
UPF1-204ENST00000596842 INAVAQ3KP66 663 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 USP39Q53GS9 565 aaKnown RBP14.84□□□□□ -0.03
UPF1-204ENST00000596842 SPOUT1Q5T280 376 aaKnown RBP14.84□□□□□ -0.03
UPF1-204ENST00000596842 CPZQ66K79 652 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 UBE2R2Q712K3 238 aaPredicted RBP14.84□□□□□ -0.03
UPF1-204ENST00000596842 C11orf74Q86VG3 221 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 SETD9Q8NE22 299 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 LGALS12Q96DT0 336 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 MED8Q96G25 268 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 DEPDC7Q96QD5 511 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 APOL4Q9BPW4 351 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 SYT17Q9BSW7 474 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 RNF167Q9H6Y7 350 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 USE1Q9NZ43 259 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 SH3BP4Q9P0V3 963 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 NEUROG3Q9Y4Z2 214 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 PMF1-BGLAPU3KQ54 211 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 EFCAB9A8MZ26 197 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 CLIC1O00299 241 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 HPRP00739 348 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 GBAP04062 536 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 NUDT7P0C024 238 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 MASP1P48740 699 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms