RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 PPP1R3AQ16821 1122 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 DEFB110Q30KQ9 67 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 THEMIS2Q5TEJ8 643 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 FCRL6Q6DN72 434 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 INO80CQ6PI98 192 aaPredicted RBP11.43□□□□□ -0.58
LIG3-213ENST00000590630 AGTRAPQ6RW13 159 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 CCDC91Q7Z6B0 441 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 ZSCAN1Q8NBB4 408 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 PPFIBP2Q8ND30 876 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 ANKRD49Q8WVL7 239 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 DPH7Q9BTV6 452 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 DERL2Q9GZP9 239 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 PRORYQ9H606 182 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 ACTR5Q9H9F9 607 aaPredicted RBP11.43□□□□□ -0.58
LIG3-213ENST00000590630 GPN2Q9H9Y4 310 aaPredicted RBP11.43□□□□□ -0.58
LIG3-213ENST00000590630 CPNE5Q9HCH3 593 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 EURLQ9NYK6 297 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 CACNA1GO43497 2377 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 BOD1L1Q8NFC6 3051 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 KALRNO60229 2985 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 A0A087WUV0 522 aaPredicted RBP11.42□□□□□ -0.58
LIG3-213ENST00000590630 OR2A25A4D2G3 310 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 NPEPPSL1A6NEC2 478 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 ZSCAN9O15535 394 aaPredicted RBP11.42□□□□□ -0.58
LIG3-213ENST00000590630 PHGDHO43175 533 aaKnown RBP11.42□□□□□ -0.58
LIG3-213ENST00000590630 EFSO43281 561 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 ZNF749O43361 778 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 HCRTR1O43613 425 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 SRPX2O60687 465 aaPredicted RBP11.42□□□□□ -0.58
LIG3-213ENST00000590630 KLK3P07288 261 aaPredicted RBP11.42□□□□□ -0.58
LIG3-213ENST00000590630 CCDC166P0CW27 439 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 LIFP15018 202 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 HRH2P25021 359 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 CRABP2P29373 138 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 SLC26A3P40879 764 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 ATP6V0D1P61421 351 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 CDKL1Q00532 357 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 RELAQ04206 551 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 SRSF6Q13247 344 aaKnown RBP11.42□□□□□ -0.58
LIG3-213ENST00000590630 TCTE1Q5JU00 501 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 TEX35Q5T0J7 233 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 PRAMEF13Q5VWM6 474 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 TLDC1Q6P9B6 456 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 ZNF517Q6ZMY9 492 aaPredicted RBP11.42□□□□□ -0.58
LIG3-213ENST00000590630 MBOAT1Q6ZNC8 495 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 TRMT10CQ7L0Y3 403 aaKnown RBP11.42□□□□□ -0.58
LIG3-213ENST00000590630 GPR155Q7Z3F1 870 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 MCATQ8IVS2 390 aaKnown RBP11.42□□□□□ -0.58
LIG3-213ENST00000590630 SLC38A9Q8NBW4 561 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 FBXL8Q96CD0 374 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 CLIP3Q96DZ5 547 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 MED8Q96G25 268 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 UBXN10Q96LJ8 280 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 DPH2Q9BQC3 489 aaPredicted RBP11.42□□□□□ -0.58
LIG3-213ENST00000590630 SELENOSQ9BQE4 189 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 PLCD4Q9BRC7 762 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 SGPP1Q9BX95 441 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 FAM117AQ9C073 453 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 SLC7A5P2Q9GIP4 190 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 SLC6A20Q9NP91 592 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 LHX9Q9NQ69 397 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 ENAMQ9NRM1 1142 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 CTNNAL1Q9UBT7 734 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 SNX7Q9UNH6 387 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 SRPK3Q9UPE1 567 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 LHX6Q9UPM6 363 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 OARD1Q9Y530 152 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 PCDHGA4Q9Y5G9 962 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 IKBKGQ9Y6K9 419 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 PIEZO2Q9H5I5 2752 aa11.42□□□□□ -0.58
LIG3-213ENST00000590630 IGKV1-8A0A0C4DH67 115 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 LOC101059948A0A1B0GTJ6 334 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 C21orf140B9A014 251 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 MEN1O00255 615 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 CDC7O00311 574 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 CTSVO60911 334 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 KRT37O76014 449 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 GUCA1CO95843 209 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 INHBAP08476 426 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 ABHD2P08910 425 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 SLC35E2BP0CK96 405 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 EZRP15311 586 aaKnown RBP11.41□□□□□ -0.58
LIG3-213ENST00000590630 TNFRSF8P28908 595 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 RORAP35398 523 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 DLSTP36957 453 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 HNMTP50135 292 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 GPS2Q13227 327 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 NAE1Q13564 534 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 TSNQ15631 228 aaKnown RBP11.41□□□□□ -0.58
LIG3-213ENST00000590630 UAP1Q16222 522 aaPredicted RBP11.41□□□□□ -0.58
LIG3-213ENST00000590630 UBAP2Q5T6F2 1119 aaKnown RBP11.41□□□□□ -0.58
LIG3-213ENST00000590630 ARHGAP40Q5TG30 622 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 MROH9Q5TGP6 573 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 PRAMEF17Q5VTA0 474 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 ZNF425Q6IV72 752 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 CAPN13Q6MZZ7 669 aaPredicted RBP11.41□□□□□ -0.58
LIG3-213ENST00000590630 RHBDD2Q6NTF9 364 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 RAPH1Q70E73 1250 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 FRA10AC1Q70Z53 315 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 RNF44Q7L0R7 432 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms