RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	FBL	P22087	321 aa	Known RBP	11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	CHRNB4	P30926	498 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	PTGER1	P34995	402 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	TNNT3	P45378	269 aa	Predicted RBP	11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	DGKQ	P52824	942 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	UBE2H	P62256	183 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	KLHL30	Q0D2K2	578 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	SNTB1	Q13884	538 aa	Known RBP	11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	OR1C1	Q15619	314 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	ZC3H12B	Q5HYM0	836 aa	Known RBP	11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	ACER2	Q5QJU3	275 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	APTX	Q7Z2E3	356 aa	Known RBP	11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	CD163	Q86VB7	1156 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	OR4N4	Q8N0Y3	316 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	EID3	Q8N140	333 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	OR5K2	Q8NHB8	316 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	ASB5	Q8WWX0	329 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	SCMH1	Q96GD3	660 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	GPATCH1	Q9BRR8	931 aa	Known RBP	11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	ENAM	Q9NRM1	1142 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	TRPC4	Q9UBN4	977 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	TEKT2	Q9UIF3	430 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	MYO6	Q9UM54	1294 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	STAB1	Q9NY15	2570 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	LOC102723996	A0A087X1L8	192 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	FAM237B	A0A1B0GVD1	139 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	RCCD1	A6NED2	376 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	PPP1R12A	O14974	1030 aa	Predicted RBP	11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	SEC24D	O94855	1032 aa	Predicted RBP	11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	AP2A1	O95782	977 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	CYP1A2	P05177	515 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	EIF2S1	P05198	315 aa	Known RBP	11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	TPO	P07202	933 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	ICAM2	P13598	275 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	PKLR	P30613	574 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	PRKCI	P41743	596 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	DYNLT1	P63172	113 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	WASHC5	Q12768	1159 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	TAF1A	Q15573	450 aa	Predicted RBP	11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	CT47A1	Q5JQC4	288 aa	Predicted RBP	11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	SLC9A4	Q6AI14	798 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	PRMT9	Q6P2P2	845 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	ZZZ3	Q8IYH5	903 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	FAM57A	Q8TBR7	257 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	ULK4	Q96C45	1275 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	RMND5B	Q96G75	393 aa	Predicted RBP	11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	C10orf90	Q96M02	699 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	IL17F	Q96PD4	163 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	NPAS2	Q99743	824 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	ANP32E	Q9BTT0	268 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	VPS37B	Q9H9H4	285 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	ZDHHC3	Q9NYG2	299 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	AIPL1	Q9NZN9	384 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	SAE1	Q9UBE0	346 aa	Predicted RBP	11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	PRSS21	Q9Y6M0	314 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	NBEAL1	Q6ZS30	2694 aa		11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	SNRNP200	O75643	2136 aa	Known RBP	11.14	□□□□□ -0.63
CLK3-222	ENST00000568232	AKAP6	Q13023	2319 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	IGLV3-16	A0A075B6K0	115 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232		A0A0J9YVX5	310 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232		A0A1B0GTH9	108 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	LRRD1	A4D1F6	860 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	LRRC10B	A6NIK2	292 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	C3orf70	A6NLC5	250 aa	Predicted RBP	11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	C2orf81	A6NN90	581 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	APOL1	O14791	398 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	KLK8	O60259	260 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	HEXA	P06865	529 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	CD46	P15529	392 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	PCSK6	P29122	969 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	PTGS2	P35354	604 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	DLX5	P56178	289 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	SF1	Q15637	639 aa	Known RBP	11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	SYT16	Q17RD7	645 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	TMEM205	Q6UW68	189 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	SNX20	Q7Z614	316 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	SERPINA9	Q86WD7	417 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	CPSF7	Q8N684	471 aa	Known RBP	11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	HEXDC	Q8WVB3	486 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	RND1	Q92730	232 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	SEC16B	Q96JE7	1060 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	ZNF354B	Q96LW1	612 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	UTP23	Q9BRU9	249 aa	Known RBP	11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	TUBB6	Q9BUF5	446 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	MENT	Q9BUN1	341 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	CLEC4M	Q9H2X3	399 aa	Predicted RBP	11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	L3MBTL1	Q9Y468	752 aa		11.13	□□□□□ -0.63
CLK3-222	ENST00000568232	CSPG4	Q6UVK1	2322 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	RASGRF2	O14827	1237 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	LIN7A	O14910	233 aa	Predicted RBP	11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	SRPX2	O60687	465 aa	Predicted RBP	11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	PROSC	O94903	275 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	LY6G6D	O95868	133 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	SP1	P08047	785 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	ZNF24	P17028	368 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	ITGAL	P20701	1170 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	ACRV1	P26436	265 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	MC4R	P32245	332 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	CSE1L	P55060	971 aa	Known RBP	11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms