RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 GCH1P30793 250 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 HOXD13P35453 343 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 MTHFRP42898 656 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 ZFP36L2P47974 494 aaKnown RBP2.35□□□□□ -2.03
VPS35-207ENST00000568191 NRIP1P48552 1158 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 LMAN1P49257 510 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 STAT2P52630 851 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 UBXN2AP68543 259 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 MC1RQ01726 317 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 CREB5Q02930 508 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 HSPB3Q12988 150 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 CDH18Q13634 790 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 TAB1Q15750 504 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 NTRK2Q16620 822 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 KRTAP13-3Q3SY46 172 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 SYT14P1Q58G82 188 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 RNASEH2BQ5TBB1 312 aaKnown RBP2.35□□□□□ -2.03
VPS35-207ENST00000568191 ADCK1Q86TW2 530 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 KBTBD6Q86V97 674 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 TAGAPQ8N103 731 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 ABHD12Q8N2K0 398 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 GPD1LQ8N335 351 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 APPL2Q8NEU8 664 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 OR7A2PQ8NGA2 310 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 OR4D10Q8NGI6 311 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 LPGAT1Q92604 370 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 FAM120BQ96EK7 910 aaKnown RBP2.35□□□□□ -2.03
VPS35-207ENST00000568191 PDLIM5Q96HC4 596 aaKnown RBP2.35□□□□□ -2.03
VPS35-207ENST00000568191 NAP1L4Q99733 375 aaKnown RBP2.35□□□□□ -2.03
VPS35-207ENST00000568191 OLFM1Q99784 485 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 MRPL1Q9BYD6 325 aaKnown RBP2.35□□□□□ -2.03
VPS35-207ENST00000568191 PRRG4Q9BZD6 226 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 ZMYND12Q9H0C1 365 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 SHARPINQ9H0F6 387 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 THAP2Q9H0W7 228 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 TUBB1Q9H4B7 451 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 EQTNQ9NQ60 294 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 DDX25Q9UHL0 483 aaKnown RBP2.35□□□□□ -2.03
VPS35-207ENST00000568191 PCDHGB4Q9UN71 923 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 PADI2Q9Y2J8 665 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 GPR75-ASB3A0A0A6YYF3 556 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 TEX28O15482 410 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 SH3BP5O60239 455 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 GPRIN2O60269 458 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 OR10H2O60403 315 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 DDHD2O94830 711 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 BCL10O95999 233 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 SMIM18P0DKX4 95 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 IRF2P14316 349 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 PFKFB1P16118 471 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 ELAVL4P26378 380 aaKnown RBP2.34□□□□□ -2.03
VPS35-207ENST00000568191 XGP55808 180 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 GCNT1Q02742 428 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 ZNF415Q09FC8 603 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 CHAF1BQ13112 559 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 PTPN14Q15678 1187 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 SNAPC1Q16533 368 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 MEA1Q16626 185 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 CA9Q16790 459 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 DUSP28Q4G0W2 176 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 XKR3Q5GH77 459 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 SPDYCQ5MJ68 293 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 FAM182AQ5T1J6 154 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 SEL1L3Q68CR1 1132 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 MFSD12Q6NUT3 480 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 ZNF841Q6ZN19 808 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 FCRLAQ7L513 359 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 ARHGAP22Q7Z5H3 698 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 SLC25A42Q86VD7 318 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 SLC47A2Q86VL8 602 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 HPS6Q86YV9 775 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 C11orf53Q8IXP5 236 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 RYBPQ8N488 228 aaPredicted RBP2.34□□□□□ -2.03
VPS35-207ENST00000568191 FAM89BQ8N5H3 189 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 THAP8Q8NA92 274 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 AQP11Q8NBQ7 271 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 NOA1Q8NC60 698 aaKnown RBP2.34□□□□□ -2.03
VPS35-207ENST00000568191 TSPAN14Q8NG11 270 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 CHPT1Q8WUD6 406 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 CHURC1Q8WUH1 139 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 PTPMT1Q8WUK0 201 aaPredicted RBP2.34□□□□□ -2.03
VPS35-207ENST00000568191 SPDL1Q96EA4 605 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 CALML4Q96GE6 196 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 ATXN7L3BQ96GX2 97 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 ZNF414Q96IQ9 312 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 C4orf45Q96LM5 186 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 SDF4Q9BRK5 362 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 CHCHD5Q9BSY4 110 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 TDRD1Q9BXT4 1180 aaKnown RBP2.34□□□□□ -2.03
VPS35-207ENST00000568191 GIMAP4Q9NUV9 329 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 HAUS2Q9NVX0 235 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 GTSE1Q9NYZ3 720 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 FBXO2Q9UK22 296 aaPredicted RBP2.34□□□□□ -2.03
VPS35-207ENST00000568191 PPIEQ9UNP9 301 aaKnown RBP2.34□□□□□ -2.03
VPS35-207ENST00000568191 R4GN57 208 aa2.34□□□□□ -2.03
VPS35-207ENST00000568191 IGSF1Q8N6C5 1336 aa2.34□□□□□ -2.04
VPS35-207ENST00000568191 A0A087WUV0 522 aaPredicted RBP2.33□□□□□ -2.04
VPS35-207ENST00000568191 hCG_1807616A0A1W2PRN6 198 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 PI4K2BG5E9Z4 385 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 AHCYL1O43865 530 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms